[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 119 items for (author: jia & yt)

EMDB-40180:
MsbA bound to cerastecin C
Method: single particle / : Chen Y, Klein D

EMDB-36076:
Cyro-EM structure of the Na+/H+ antipoter SOS1 from Arabidopsis thaliana,class2
Method: single particle / : Yang GH, Zhang YM, Zhou JQ, Jia YT, Xu X, Fu P, Wu HY

EMDB-36077:
Cyro-EM structure of the Na+/H+ antipoter SOS1 from Arabidopsis thaliana,class1
Method: single particle / : Yang GH, Zhang YM, Zhou JQ, Jia YT, Xu X, Fu P, Wu HY

EMDB-34202:
AK-42 inhibitor binding human ClC-2 TMD
Method: single particle / : Wang L

EMDB-31532:
Cryo-EM structure of the Potassium channel AKT1 mutant from Arabidopsis thaliana
Method: single particle / : Yang GH, Lu YM, Jia YT, Zhang YM, Tang RF, Xu X, Li XM, Lei JL

EMDB-32769:
Cryo-EM structure of the Potassium channel AKT1 from Arabidopsis thaliana
Method: single particle / : Yang GH, Lu YM, Zhang YM, Jia YT, Li XM, Lei JL

EMDB-33467:
Cryo-EM structure of the AKT1-AtKC1 complex from Arabidopsis thaliana
Method: single particle / : Yang GH, Lu YM, Jia YT, Yang F, Zhang YM, Xu X, Li XM, Lei JL

EMDB-32096:
Cryo-EM structure of the ATP-binding cassette sub-family D member 1 from Homo sapiens
Method: single particle / : Yang GH, Jia YT, Zhang YM

EMDB-28558:
SARS-CoV-2 BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment (local refinement of the RBD and S2X324)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-28559:
SARS-CoV-2 Omicron BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8erq:
SARS-CoV-2 BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment (local refinement of the RBD and S2X324)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8err:
SARS-CoV-2 Omicron BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-33248:
Cryo-EM structure of DHEA-ADGRG2-BT-Gs complex
Method: single particle / : Guo SC, Xiao P, Lin H, Sun JP, Yu X

EMDB-33249:
Cryo-EM structure of DHEA-ADGRG2-FL-Gs complex
Method: single particle / : Guo SC, Xiao P, Lin H, Sun JP, Yu X

EMDB-33250:
Cryo-EM structure of DHEA-ADGRG2-BT-Gs complex at lower state
Method: single particle / : Guo SC, Xiao P, Lin H, Sun JP, Yu X

EMDB-26507:
SARS-CoV-2 spike in complex with Multivalent miniprotein inhibitor FUS231-P24 (2RBDs open)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-26508:
SARS-CoV-2 spike in complex with multivalent miniprotein inhibitor FUS231-P24 (3RBDs open)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-26509:
SARS-CoV-2 spike in complex with multivalent miniprotein inhibitor FUS31-G10 (2RBDs open)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-26510:
SARS-CoV-2 spike in complex with multivalent miniprotein inhibitor FUS31-G10 (3RBDs open)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-26511:
SARS-CoV-2 spike in complex with AHB2-2GS-SB175 (local refinement of the RBD and AHB2)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-26512:
SARS-CoV-2 spike in complex with AHB2-2GS-SB175
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-31232:
Structural basis for the tethered peptide activation of adhesion GPCRs
Method: single particle / : Ping YQ, Xiao P, Yang F, Zhao RJ, Guo SC, Yan X, Wu X, Sun JP

EMDB-31254:
GPR114-Gs-scFv16 complex
Method: single particle / : Ping Y

EMDB-24473:
Structure of a BAM/EspP(beta9-12) hybrid-barrel intermediate
Method: single particle / : Wu RR, Noinaj N

EMDB-24474:
Structure of a BAM in MSP1E3D1 nanodiscs at 4 Angstrom resolution
Method: single particle / : Wu RR, Noinaj N

EMDB-24475:
Structure of BAM in MSP1E3D1 nanodiscs prepared from E. coli outer membranes
Method: single particle / : Wu RR, Noinaj N

EMDB-24476:
The structure of BAM in MSP1D1 nanodiscs
Method: single particle / : Wu RR, Noinaj N

EMDB-24477:
The structure of BAM in MSP2N2 nanodiscs
Method: single particle / : Wu RR, Noinaj N

EMDB-24478:
The structure of BAM in MSP1E3D1 at 6.9 Angstrom resolution
Method: single particle / : Wu RR, Noinaj N

EMDB-24481:
The structure of BAM in complex with EspP at 7 Angstrom resolution
Method: single particle / : Wu RR, Noinaj N

EMDB-25448:
Negative-stain EM reconstruction of SpFN_1B-06-PL, a SARS-CoV-2 spike fused to H.pylori ferritin nanoparticle vaccine candidate
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25449:
RFN_131, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Receptor-Binding Domain
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25450:
pCoV146, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike Receptor-Binding and N-Terminal Domains
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25451:
pCoV111, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike S1 Subunit
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-24347:
SARS-CoV-2 S glycoprotein in complex with S2X259 Fab
Method: single particle / : Veesler D, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-24365:
SARS-CoV-2 S bound to S2X259 Fab (local refinement of the RBD/S2X259 variable domains)
Method: single particle / : Veesler D, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-7ra8:
SARS-CoV-2 S glycoprotein in complex with S2X259 Fab
Method: single particle / : Veesler D, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-7ral:
SARS-CoV-2 S bound to S2X259 Fab (local refinement of the RBD/S2X259 variable domains)
Method: single particle / : Veesler D, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-24299:
SARS-CoV-2 spike in complex with the S2D106 neutralizing antibody Fab fragment (local refinement of the RBD and S2D106)
Method: single particle / : Park YJ, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-24300:
SARS-CoV-2 spike in complex with the S2D106 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Veesler D

EMDB-24301:
SARS-CoV-2 spike glycoprotein ectodomain in complex with the S2H97 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Veesler D

PDB-7r7n:
SARS-CoV-2 spike in complex with the S2D106 neutralizing antibody Fab fragment (local refinement of the RBD and S2D106)
Method: single particle / : Park YJ, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-30895:
The structure of FC08 Fab-hA.CE2-RBD complex
Method: single particle / : Cao L, Wang X

EMDB-23577:
SARS-CoV-2 S/S2M11/S2X333 Local Refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-23578:
SARS-CoV-2 S/S2M11/S2L28 Local Refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-23579:
SARS-CoV-2 S/S2M11/S2X333 Global Refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-23580:
SARS-CoV-2 S/S2M11/S2L28 Global Refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-23581:
SARS-CoV-2 S/S2M11/S2M28 Local Refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-23582:
SARS-CoV-2 S/S2M11/S2M28 Global Refinement
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-23583:
SARS-CoV-2 S/S2M11/S2M24 map
Method: single particle / : McCallum M, Veesler D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more