[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 151 items for (author: yan & jj)

EMDB-42676:
5-HT2AR bound to Lisuride in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Barros-Alvarez X, Kim K, Panova O, Roth BL, Skiniotis G

EMDB-42999:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

EMDB-36776:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric apo state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-36777:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron DR1 at symmetric pre-cleavage state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-36778:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric post cleavge state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-36786:
The Streptococcus azizii ORF-less Group IIC intron HYER2 at apo state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-36779:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 with 10-nt TRS at symmetric apo state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-43008:
Fab fragment of human mAb #58 in complex with computationally optimized broadly reactive H1 influenza hemagglutinin X6
Method: single particle / : Nagashima KA, Mousa JJ

EMDB-37295:
Cryo-EM structure of the yeast TOM core complex crosslinked by BS3 (from TOM-TIM23 complex)
Method: single particle / : Wang Q, Guan ZY, Zhuang JJ, Huang R, Yin P

EMDB-37294:
Cryo-EM structure of the yeast TOM core complex (from TOM-TIM23 complex)
Method: single particle / : Wang Q, Guan ZY, Zhuang JJ, Huang R, Yin P

EMDB-35985:
Cryo-EM structure of starch degradation complex of BAM1-LSF1-MDH
Method: single particle / : Guan ZY, Liu J, Yan JJ

EMDB-37429:
Cryo-EM structure of the SEP363856-bound mTAAR1-Gs complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

EMDB-37430:
Cryo-EM structure of the ZH8651-bound mTAAR1-Gs complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

EMDB-37431:
Cryo-EM structure of the TMA-bound mTAAR1-Gs complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

EMDB-37432:
Cryo-EM structure of the PEA-bound mTAAR1-Gs complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

EMDB-37433:
Cryo-EM structure of the ZH8667-bound mTAAR1-Gs complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

EMDB-37434:
Cryo-EM structure of the ZH8651-bound hTAAR1-Gs complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

EMDB-37435:
Cryo-EM structure of the ZH8651-bound mTAAR1-Gq complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

EMDB-37436:
Cryo-EM structure of the PEA-bound hTAAR1-Gs complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

EMDB-37437:
Cryo-EM structure of the CHA-bound mTAAR1-Gq complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

EMDB-37438:
Cryo-EM structure of the CHA-bound mTAAR1 complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

EMDB-35347:
Structure of R2 with 3'UTR and DNA in binding state
Method: single particle / : Deng P, Tan S, Wang J, Liu JJ

EMDB-35348:
Structure of R2 with 3'UTR and DNA in unwinding state
Method: single particle / : Deng P, Tan S, Wang J, Liu JJ

EMDB-35349:
Structure of R2 with 5'ORF
Method: single particle / : Deng P, Tan S, Wang J, Liu JJ

EMDB-35350:
Structure of R2 with 5'ORF and 3'UTR
Method: single particle / : Deng P, Tan S, Wang J, Liu JJ

EMDB-26855:
Arabidopsis DDM1 bound to nucleosome (H2A.W, H2B, H3.3, H4, with 147 bp DNA)
Method: single particle / : Ipsaro JJ, Adams DW, Joshua-Tor L

EMDB-29930:
T. cruzi topoisomerase II alpha bound to dsDNA and the covalent inhibitor CT1
Method: single particle / : Schenk A, Deniston C, Noeske J

PDB-8gcc:
T. cruzi topoisomerase II alpha bound to dsDNA and the covalent inhibitor CT1
Method: single particle / : Schenk A, Deniston C, Noeske J

EMDB-27257:
Apo gRAMP
Method: single particle / : Hu C, Nam KH, Schuler G, Ke A

EMDB-27259:
gRAMP-match PFS target
Method: single particle / : Hu C, Nam KH, Schuler G, Ke A

EMDB-27260:
gRAMP-TPR-CHAT (Craspase)
Method: single particle / : Hu C, Nam KH, Schuler G, Ke A

EMDB-27261:
gRAMP-TPR-CHAT Non match PFS target RNA(Craspase)
Method: single particle / : Hu C, Nam KH, Schuler G, Ke A

EMDB-27262:
gRAMP-TPR-CHAT match PFS target RNA(Craspase)
Method: single particle / : Hu C, Nam KH, Schuler G, Ke A

EMDB-27263:
gRAMP non-matching PFS-with Mg
Method: single particle / : Hu C, Nam KH, Schuler G, Ke A

EMDB-29857:
Molecular mechanism of nucleotide inhibition of human uncoupling protein 1
Method: single particle / : Gogoi P, Jones SA, Ruprecht JJ, King MS, Lee Y, Zogg T, Pardon E, Chand D, Steimle S, Copeman D, Cotrim CA, Steyaert J, Crichton PG, Moiseenkova-Bell V, Kunji ERS

EMDB-28163:
Cryo-EM map of octopus sensory receptor CRT1
Method: single particle / : Kang G, Kim JJ, Allard CAH, Valencia-Montoya WA, Bellono NW, Hibbs RE

EMDB-28167:
Cryo-EM map of squid sensory receptor CRB1
Method: single particle / : Kang G, Kim JJ, Allard CAH, Valencia-Montoya WA, van Giesen L, Kilian PB, Bai X, Bellono NW, Hibbs RE

EMDB-27112:
S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (global refinement)
Method: single particle / : Ozorowski G, Torres JL, Turner HL, Ward AB

EMDB-27113:
S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (focused refinement)
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-26160:
Structure of human serotonin transporter bound to small molecule '8090 in lipid nanodisc and NaCl
Method: single particle / : Singh I, Seth A

EMDB-33241:
Cryo-EM Structure of Human Niacin Receptor HCA2-Gi protein complex
Method: single particle / : Yang Y, Kang HJ, Gao RG, Wang JJ, Han GW, DiBerto JF, Wu LJ, Tong JH, Qu L, Wu YR, Pileski R, Li XM, Zhang XC, Zhao SW, Kenakin T, Wang Q, Stevens RC, Peng W, Roth BL, Rao ZH, Liu ZJ

EMDB-33983:
Structure of CasPi with guide RNA and target DNA
Method: single particle / : Li CP, Wang J, Liu JJ

EMDB-33853:
Cryo-EM structure of SAH-bound MTA1-MTA9-p1-p2 complex
Method: single particle / : Yan JJ, Guan ZY, Liu FQ, Yan XH, Hou MJ, Yin P

EMDB-33854:
Cryo-EM structure of SAM-bound MTA1-MTA9-p1-p2 complex
Method: single particle / : Yan JJ, Guan ZY, Liu FQ, Yan XH, Hou MJ, Yin P

EMDB-15669:
Jumbo Phage phi-kp24 tail outer sheath
Method: helical / : Ouyang R, Briegel A

EMDB-33923:
Cryo-EM structure of SARS-CoV-2 Omicron spike glycoprotein in complex with three neutralizing nanobody 3-2A2-4
Method: single particle / : Wang X, Zhang L, Ren Y, Li M

EMDB-14356:
Jumbo Phage phi-Kp24 full capsid
Method: single particle / : Ouyang R, Briegel A

EMDB-14357:
Jumbo Phage phi-Kp24 extended tail
Method: single particle / : Ouyang R, Briegel A

EMDB-25606:
Zika Virus particle bound with IgM antibody DH1017 Fab fragment
Method: single particle / : Miller AS, Kuhn RJ

EMDB-13862:
Jumbo Phage phi-Kp24 empty capsid
Method: single particle / : Ouyang R, Briegel A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more