[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 61 items for (author: nelson & me)

EMDB-17363:
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state
Method: single particle / : Gonzalez-Lopez A, Selmer M

EMDB-17364:
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric hybrid state
Method: single particle / : Gonzalez-Lopez A, Selmer M

EMDB-17365:
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state
Method: single particle / : Gonzalez-Lopez A, Selmer M

EMDB-41423:
Cryo-EM structure of DDB1dB:CRBN:Pomalidomide:SD40
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

EMDB-41424:
Cryo-EM structure of DDB1dB:CRBN:PT-179:SD40, conformation 1
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

EMDB-41425:
Cryo-EM structure of DDB1dB:CRBN:PT-179:SD40, conformation 2
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

EMDB-41777:
Map from local refinement (focused on CRBN) of DDB1dB:CRBN:Pomalidomide:SD40
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

EMDB-41778:
Map from local refinement (focused on CRBN) of DDB1dB:CRBN:PT-179:SD40, conformation 1
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

EMDB-41779:
Map from local refinement (focused on CRBN) of DDB1dB:CRBN:PT-179:SD40, conformation 2
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

PDB-8tnp:
Cryo-EM structure of DDB1dB:CRBN:Pomalidomide:SD40
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

PDB-8tnq:
Cryo-EM structure of DDB1dB:CRBN:PT-179:SD40, conformation 1
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

PDB-8tnr:
Cryo-EM structure of DDB1dB:CRBN:PT-179:SD40, conformation 2
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

EMDB-40711:
CryoEM structure of Western equine encephalitis virus VLP in complex with the chimeric Du-D1-Mo-D2 MXRA8 receptor
Method: single particle / : Zimmerman MI, Fremont DH, Center for Structural Genomics of Infectious Diseases (CSGID)

PDB-8sqn:
CryoEM structure of Western equine encephalitis virus VLP in complex with the chimeric Du-D1-Mo-D2 MXRA8 receptor
Method: single particle / : Zimmerman MI, Fremont DH, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-27272:
CryoEM structure of Western equine encephalitis virus VLP
Method: single particle / : Zimmerman MI, Fremont DH

EMDB-27271:
CryoEM structure of Western equine encephalitis virus VLP in complex with the avian MXRA8 receptor
Method: single particle / : Zimmerman MI, Fremont DH

EMDB-28644:
CryoEM structure of Western equine encephalitis virus VLP in complex with the avian MXRA8 receptor
Method: single particle / : Zimmerman MI, Fremont DH, Center for Structural Genomics of Infectious Diseases (CSGID)

EMDB-15882:
Mp2Ba1 pre-pore
Method: single particle / : Marini G, Poland B, Leininger C, Lukoyanova N, Spielbauer D, Barry J, Altier D, Lum A, Scolaro E, Perez Ortega C, Yalpani N, Sandahl G, Mabry T, Klever J, Nowatzki T, Zhao JZ, Sethi A, Kassa A, Crane V, Lu A, Nelson ME, Eswar N, Topf M, Saibil HR

EMDB-15883:
Mpf2Ba1 pore
Method: single particle / : Marini G, Poland B, Leininger C, Lukoyanova N, Spielbauer D, Barry J, Altier D, Lum A, Scolaro E, Perez Ortega C, Yalpani N, Sandahl G, Mabry T, Klever J, Nowatzki T, Zhao JZ, Sethi A, Kassa A, Crane V, Lu A, Nelson ME, Eswar N, Topf M, Saibil HR

EMDB-25448:
Negative-stain EM reconstruction of SpFN_1B-06-PL, a SARS-CoV-2 spike fused to H.pylori ferritin nanoparticle vaccine candidate
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25449:
RFN_131, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Receptor-Binding Domain
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25450:
pCoV146, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike Receptor-Binding and N-Terminal Domains
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25451:
pCoV111, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike S1 Subunit
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-23312:
BG505 SOSIP.v5.2 in complex with VRC40.01 and RM19R Fabs
Method: single particle / : Cottrell CA, Torres JL, Wu NR, Ward AB

PDB-7lg6:
BG505 SOSIP.v5.2 in complex with VRC40.01 and RM19R Fabs
Method: single particle / : Cottrell CA, Torres JL, Wu NR, Ward AB

EMDB-11588:
Structure of low-light grown Chlorella ohadii Photosystem I
Method: single particle / : Caspy I, Nelson N, Nechushtai R, Neumann E, Shkolnisky Y

EMDB-11589:
Structure of high-light grown Chlorella ohadii photosystem I
Method: single particle / : Caspy I, Nelson N, Nechushtai R, Shkolnisky Y, Neumann E

EMDB-11640:
Structure of small high-light grown Chlorella ohadii photosystem I
Method: single particle / : Caspy I, Nelson N

PDB-6zzx:
Structure of low-light grown Chlorella ohadii Photosystem I
Method: single particle / : Caspy I, Nelson N, Nechushtai R, Neumann E, Shkolnisky Y

PDB-6zzy:
Structure of high-light grown Chlorella ohadii photosystem I
Method: single particle / : Caspy I, Nelson N, Nechushtai R, Shkolnisky Y, Neumann E

PDB-7a4p:
Structure of small high-light grown Chlorella ohadii photosystem I
Method: single particle / : Caspy I, Nelson N, Nechushtai R, Shkolnisky Y, Neumann E

EMDB-23424:
Cryo-EM map of Q23.17_DS-SOSIP in complex with Glycan276-Dependent Broadly Neutralizing Antibody 179NC75 Fab
Method: single particle / : Manne K, Acharya P

PDB-7llk:
Cryo-EM structure of Q23.17_DS-SOSIP in complex with Glycan276-Dependent Broadly Neutralizing Antibody 179NC75 Fab
Method: single particle / : Manne K, Acharya P

EMDB-23411:
Cryo-EM map of BG505 DS-SOSIP in complex with glycan276-dependent broadly neutralizing antibody VRC40.01 Fab
Method: single particle / : Manne K, Acharya P

EMDB-23412:
Cryo-EM map of BG505 DS-SOSIP in complex with Glycan276-Dependent Broadly Neutralizing Antibody VRC33.01 Fab
Method: single particle / : Manne K, Acharya P

PDB-7ll1:
Cryo-EM structure of BG505 DS-SOSIP in complex with glycan276-dependent broadly neutralizing antibody VRC40.01 Fab
Method: single particle / : Manne K, Acharya P

PDB-7ll2:
Cryo-EM structure of BG505 DS-SOSIP in complex with Glycan276-Dependent Broadly Neutralizing Antibody VRC33.01 Fab
Method: single particle / : Manne K, Acharya P

EMDB-22913:
Structure of the SARS-CoV-2 S 6P trimer in complex with the ACE2 protein decoy, CTC-445.2 (State 1)
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-22914:
Structure of the SARS-CoV-2 S 6P trimer in complex with the ACE2 protein decoy, CTC-445.2 (State 2)
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-22915:
Structure of the SARS-CoV-2 S 6P trimer in complex with the ACE2 protein decoy, CTC-445.2 (State 4)
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-22916:
Structure of the SARS-CoV-2 S 6P trimer in complex with the ACE2 protein decoy, CTC-445.2 (State 4)
Method: single particle / : Barnes CO, Bjorkman PJ

PDB-7kl9:
Structure of the SARS-CoV-2 S 6P trimer in complex with the ACE2 protein decoy, CTC-445.2 (State 4)
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-20817:
Cryo-EM structure of HIV-1 neutralizing antibody DH270 UCA3 in complex with CH848 10.17DT Env
Method: single particle / : Acharya P, Henderson RC, Saunders KO, Haynes BF

EMDB-20818:
Cryo-EM structure of HIV-1 neutralizing antibody DH270.6 in complex with CH848 10.17DT Env
Method: single particle / : Acharya P, Henderson RC, Saunder KO, Haynes BF

EMDB-20819:
Cryo-EM structure of vaccine-elicited HIV-1 neutralizing antibody DH270.mu1 in complex with CH848 10.17DT Env
Method: single particle / : Acharya P, Henderson R, Saunders K, Haynes BF

PDB-6um5:
Cryo-EM structure of HIV-1 neutralizing antibody DH270 UCA3 in complex with CH848 10.17DT Env
Method: single particle / : Acharya P, Henderson RC, Saunders KO, Haynes BF

PDB-6um6:
Cryo-EM structure of HIV-1 neutralizing antibody DH270.6 in complex with CH848 10.17DT Env
Method: single particle / : Acharya P, Henderson RC, Saunder KO, Haynes BF

PDB-6um7:
Cryo-EM structure of vaccine-elicited HIV-1 neutralizing antibody DH270.mu1 in complex with CH848 10.17DT Env
Method: single particle / : Acharya P, Henderson RC, Saunders K, Haynes BF

EMDB-8573:
HIV-1 CH505 Transmitted Founder SOSIP.664 Env trimer in Complex with the DH576 Fab from the RV305 Trial
Method: single particle / : Fera D, Harrison SC

EMDB-8225:
Tomographic subvolume average of Ebola (EBOV-Makona) glycoprotein on the surface of virus-like particles
Method: subtomogram averaging / : Tran EEH, Subramaniam S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more