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PDB: 201 results

2FMY
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CO-dependent transcription factor CooA from Carboxydothermus hydrogenoformans (Imidazole-bound form)
Descriptor: IMIDAZOLE, PROTOPORPHYRIN IX CONTAINING FE, carbon monoxide oxidation system transcription regulator CooA-1
Authors:Higuchi, Y, Komori, H.
Deposit date:2006-01-10
Release date:2007-01-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of CO-sensing Transcription Activator CooA Bound to Exogenous Ligand Imidazole
J.Mol.Biol., 367, 2007
2RDV
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BU of 2rdv by Molmil
RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, MONOCLINIC CRYSTAL FORM
Descriptor: FE (III) ION, RUBREDOXIN
Authors:Higuchi, Y, Yasuoka, N.
Deposit date:1998-10-07
Release date:1999-05-18
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure determination of rubredoxin from Desulfovibrio vulgaris Miyazaki F in two crystal forms.
Acta Crystallogr.,Sect.D, 55, 1999
1H2A
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BU of 1h2a by Molmil
SINGLE CRYSTALS OF HYDROGENASE FROM DESULFOVIBRIO VULGARIS
Descriptor: FE3-S4 CLUSTER, HYDROGENASE, IRON/SULFUR CLUSTER, ...
Authors:Higuchi, Y, Yasuoka, N.
Deposit date:1997-10-17
Release date:1999-02-09
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Unusual ligand structure in Ni-Fe active center and an additional Mg site in hydrogenase revealed by high resolution X-ray structure analysis.
Structure, 5, 1997
1H2R
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BU of 1h2r by Molmil
THREE-DIMENSIONAL STRUCTURE OF NI-FE HYDROGENASE FROM DESULFIVIBRIO VULGARIS MIYAZAKI F IN THE REDUCED FORM AT 1.4 A RESOLUTION
Descriptor: FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, MAGNESIUM ION, ...
Authors:Higuchi, Y, Ogata, H.
Deposit date:1999-06-14
Release date:2000-01-05
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Removal of the bridging ligand atom at the Ni-Fe active site of [NiFe] hydrogenase upon reduction with H2, as revealed by X-ray structure analysis at 1.4 A resolution.
Structure Fold.Des., 7, 1999
1WIV
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BU of 1wiv by Molmil
solution structure of RSGI RUH-023, a UBA domain from Arabidopsis cDNA
Descriptor: ubiquitin-specific protease 14
Authors:Higuchi, Y, Abe, T, Hirota, H, Izumi, K, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-28
Release date:2004-11-28
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:solution structure of RSGI RUH-023, a UBA domain from Arabidopsis cDNA
To be Published
1RDV
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BU of 1rdv by Molmil
RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, TRIGONAL CRYSTAL FORM
Descriptor: FE (III) ION, RUBREDOXIN
Authors:Higuchi, Y, Yasuoka, N.
Deposit date:1998-09-30
Release date:1999-05-18
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure determination of rubredoxin from Desulfovibrio vulgaris Miyazaki F in two crystal forms.
Acta Crystallogr.,Sect.D, 55, 1999
2CDV
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BU of 2cdv by Molmil
REFINED STRUCTURE OF CYTOCHROME C3 AT 1.8 ANGSTROMS RESOLUTION
Descriptor: CYTOCHROME C3, HEME C
Authors:Higuchi, Y, Kusunoki, M, Matsuura, Y, Yasuoka, N, Kakudo, M.
Deposit date:1983-11-15
Release date:1984-02-02
Last modified:2021-03-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Refined structure of cytochrome c3 at 1.8 A resolution
J.Mol.Biol., 172, 1984
1VEK
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BU of 1vek by Molmil
Solution Structure of RSGI RUH-011, a UBA Domain from Arabidopsis cDNA
Descriptor: ubiquitin-specific protease 14, putative
Authors:Higuchi, Y, Abe, T, Hirota, H, Saito, K, Koshiba, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-31
Release date:2004-09-30
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution Structure of RSGI RUH-011, a UBA Domain from Arabidopsis cDNA
To be Published
2FFN
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BU of 2ffn by Molmil
The E41Q mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
Descriptor: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y, Komori, H, Morita, K.
Deposit date:2005-12-20
Release date:2006-12-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Roles of charged residues in pH-dependent redox properties of cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
BIOPHYSICS(BSJ), 2, 2006
1VEJ
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BU of 1vej by Molmil
Solution Structure of RSGI RUH-016, a UBA Domain from mouse cDNA
Descriptor: RIKEN cDNA 4931431F19
Authors:Higuchi, Y, Abe, T, Hirota, H, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-31
Release date:2005-05-31
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution Structure of RSGI RUH-016, a UBA Domain from mouse cDNA
To be Published
2EWK
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BU of 2ewk by Molmil
The T24V mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
Descriptor: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y, Komori, H, Morita, K.
Deposit date:2005-11-03
Release date:2006-11-28
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1 Å)
Cite:Strategic roles of axial histidines in structure formation and redox regulation of tetraheme cytochrome c3.
Biochemistry, 47, 2008
2EWI
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BU of 2ewi by Molmil
The F20Y mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
Descriptor: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y, Komori, H, Morita, K.
Deposit date:2005-11-03
Release date:2006-11-28
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1 Å)
Cite:The F20Y mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris
To be Published
2EWU
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The F20H mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
Descriptor: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y, Komori, H, Morita, K.
Deposit date:2005-11-07
Release date:2006-11-28
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:The F20H mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
To be Published
2YXW
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BU of 2yxw by Molmil
The deletion mutant of Multicopper Oxidase CueO
Descriptor: Blue copper oxidase cueO, COPPER (II) ION, CU-O-CU LINKAGE, ...
Authors:Higuchi, Y, Komori, H.
Deposit date:2007-04-27
Release date:2008-01-01
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site
J.Mol.Biol., 373, 2007
2YXV
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BU of 2yxv by Molmil
The deletion mutant of Multicopper Oxidase CueO
Descriptor: Blue copper oxidase cueO, COPPER (II) ION, CU-O-CU LINKAGE, ...
Authors:Higuchi, Y, Komori, H.
Deposit date:2007-04-27
Release date:2008-01-01
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site
J.Mol.Biol., 373, 2007
2YYW
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BU of 2yyw by Molmil
The F20M mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
Descriptor: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y, Komori, H.
Deposit date:2007-05-02
Release date:2008-05-06
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Structures of Noncoordinated Aromatic Residue Mutants in Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
To be Published
2YYX
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BU of 2yyx by Molmil
The Y65A mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
Descriptor: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y, Komori, H.
Deposit date:2007-05-02
Release date:2008-05-06
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structures of Noncoordinated Aromatic Residue Mutants in Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
To be Published
2Z47
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BU of 2z47 by Molmil
The Y66L mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
Descriptor: Cytochrome c3, HEME C
Authors:Higuchi, Y, Komori, H.
Deposit date:2007-06-13
Release date:2008-06-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structures of Noncoordinated Aromatic Residue Mutants in Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
To be Published
2YXC
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BU of 2yxc by Molmil
The H25M mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
Descriptor: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Higuchi, Y, Komori, H.
Deposit date:2007-04-26
Release date:2008-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Strategic roles of axial histidines in structure formation and redox regulation of tetraheme cytochrome c3.
Biochemistry, 47, 2008
1F75
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BU of 1f75 by Molmil
CRYSTAL STRUCTURE OF UNDECAPRENYL DIPHOSPHATE SYNTHASE FROM MICROCOCCUS LUTEUS B-P 26
Descriptor: SULFATE ION, UNDECAPRENYL PYROPHOSPHATE SYNTHETASE
Authors:Fujihashi, M, Zhang, Y.-W, Higuchi, Y, Li, X.-Y, Koyama, T, Miki, K.
Deposit date:2000-06-26
Release date:2001-03-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of cis-prenyl chain elongating enzyme, undecaprenyl diphosphate synthase.
Proc.Natl.Acad.Sci.USA, 98, 2001
5XFA
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BU of 5xfa by Molmil
Crystal structure of NAD+-reducing [NiFe]-hydrogenase in the H2-reduced state
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE2/S2 (INORGANIC) CLUSTER, IRON/SULFUR CLUSTER, ...
Authors:Shomura, Y, Taketa, M, Nakashima, H, Tai, H, Nakagawa, H, Ikeda, Y, Ishii, M, Igarashi, Y, Nishihara, H, Yoon, K.S, Ogo, S, Hirota, S, Higuchi, Y.
Deposit date:2017-04-09
Release date:2017-08-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of the redox switches in the NAD(+)-reducing soluble [NiFe]-hydrogenase
Science, 357, 2017
3KLJ
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BU of 3klj by Molmil
Crystal structure of NADH:rubredoxin oxidoreductase from Clostridium acetobutylicum
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NAD(FAD)-dependent dehydrogenase, NirB-family (N-terminal domain)
Authors:Nishikawa, K, Shomura, Y, Kawasaki, S, Niimura, Y, Higuchi, Y.
Deposit date:2009-11-08
Release date:2010-02-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of NADH:rubredoxin oxidoreductase from Clostridium acetobutylicum: a key component of the dioxygen scavenging system in obligatory anaerobes.
Proteins, 78, 2010
7YU1
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BU of 7yu1 by Molmil
Structure of 6-aminohexanoate-oligomer hydrolase NylC precursor, D122G/H130Y/T267C mutant
Descriptor: 6-aminohexanoate-oligomer endohydrolase, GLYCEROL, SODIUM ION, ...
Authors:Negoro, S, Higuchi, Y.
Deposit date:2022-08-16
Release date:2023-03-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:X-ray crystallographic and mutational analysis of the NylC precursor: catalytic mechanism of autocleavage and substrate hydrolysis of nylon hydrolase.
Febs J., 290, 2023
7YU0
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BU of 7yu0 by Molmil
Structure of 6-aminohexanoate-oligomer hydrolase NylC precursor, H130Y/N266A/T267A mutant
Descriptor: 6-aminohexanoate-oligomer endohydrolase, GLYCEROL, SODIUM ION, ...
Authors:Negoro, S, Higuchi, Y.
Deposit date:2022-08-16
Release date:2023-03-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:X-ray crystallographic and mutational analysis of the NylC precursor: catalytic mechanism of autocleavage and substrate hydrolysis of nylon hydrolase.
Febs J., 290, 2023
4NER
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BU of 4ner by Molmil
Multicopper Oxidase CueO (data1)
Descriptor: Blue copper oxidase CueO, COPPER (II) ION, HYDROXIDE ION, ...
Authors:Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y.
Deposit date:2013-10-30
Release date:2014-03-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:New insights into the catalytic active-site structure of multicopper oxidases.
Acta Crystallogr.,Sect.D, 70, 2014

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