[English] 日本語
Yorodumi Species
- Taxonomy data in EMDB/PDB/SASBDB -

-
Search query

Name, Taxonomy-ID, or Keywords:

-
Taxonomy info

Name *1Pseudomonas aeruginosa
Other names *1synonym: Bacillus aeruginosus / Bacillus pyocyaneus ...Bacillus aeruginosus / Bacillus pyocyaneus / Bacterium aeruginosum / Bacterium pyocyaneum / Micrococcus pyocyaneus / probable synonym or variety: "Pseudomonas polycolor" Clara 1930 / Pseudomonas polycolor / Pseudomonas pyocyanea / includes: bacterium ASFP-37 / bacterium ASFP-38 ...bacterium ASFP-37 / bacterium ASFP-38 / bacterium ASFP-45 / bacterium ASFP-46 / bacterium ASFP-48 / bacterium CRM125 / Pseudomonas sp. 2_1_26 / Pseudomonas sp. ACP_02 / Pseudomonas sp. CRRI 93 / Pseudomonas sp. HSA1/2016 / Pseudomonas sp. NCIM 2036 / Pseudomonas sp. NCIM 2862 / Pseudomonas sp. PR_01 / Pseudomonas sp. PSE5 / Pseudomonas sp. RV3 / Pseudomonas sp. UFT2/2016 / others: ATCC 10145 / ATCC 10145-U ...ATCC 10145 / ATCC 10145-U / "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885 / "Bacillus pyocyaneus" (Zopf 1884) Flugge 1886 / "Bacterium aeruginosum" Cohn 1872 / "Bacterium aeruginosum" Schroeter 1872 / "Bacterium pyocyaneum" (Zopf 1884) Lehmann and Neumann 1896 / CCEB 481 / CCUG 28447 / CCUG 29297 / CCUG 551 / CFBP 2466 / CIP 100720 / culture-collection:NRRL:B:771 / culture-collection:VKM:B:588 / DSM 50071 / IBCS 277 / ICPB 2523 / IFO 12689 / JCM 5962 / LMG 1242 / LMG:1242 / "Micrococcus pyocyaneus" Zopf 1884 / NBRC 12689 / NCCB 76039 / NCIB 8295 / NCIB:8295 / NCIMB 8295 / NCTC 10332 / NRRL B-771 / Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980) / Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980) emend. Rudra et al. 2022 / "Pseudomonas pyocyanea" (Zopf 1884) Migula 1895 / RH 815 / VKM B-588
Names in strucutre dataPseudomonas aeruginos
NCBI Taxonomy ID287
Lineage *1cellular organisms > Bacteria > Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas aeruginosa group
Wikipedia
Wikipedia - Pseudomonas aeruginosa:

Pseudomonas aeruginosa is a common encapsulated, Gram-negative, aerobic–facultatively anaerobic, rod-shaped bacterium that can cause disease in plants and animals, including humans. A species of considerable medical importance, P. aeruginosa is a multidrug resistant pathogen recognized for its ubiquity, its intrinsically advanced antibiotic resistance mechanisms, and its association with serious illnesses – hospital-acquired infections such as ventilator-associated pneumonia and various sepsis syndromes...

Commentbacteria
References*1: NCBI Taxonomy

-
EMDB entries (122)

-
PDB entries (1974)

-
SASBDB entries (3)

Showing all 3 items

SASDAC8:
SDS hydrolase SdsA1 (Pseudomonas aeruginosa SDS hydrolase SdsA1)

SASDDB8:
Periplasmic domain of inner membrane protein GspL, dimer

SASDDC8:
Periplasmic domain of inner membrane protein GspL, tetramer

+
About Yorodumi Species

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi Speices

Taxonomy data in EMDB/PDB/SASBDB

Taxonomy database of sample sources of data in EMDB/PDB/SASBDB

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Mar 5, 2020. Novel coronavirus structure data

Read more