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- PDB-8ti7: Crystal structure of profilin from Dermatophagoides pteronyssinus... -

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Basic information

Entry
Database: PDB / ID: 8ti7
TitleCrystal structure of profilin from Dermatophagoides pteronyssinus in complex with a poly(L-proline) peptide
Components
  • Profilin
  • poly(L-proline)
KeywordsALLERGEN / mite profilin / dust mite / allergy
Function / homology
Function and homology information


regulation of cellular component biogenesis / regulation of cellular component organization / actin binding / cytoskeleton
Similarity search - Function
: / Profilin conserved site / Profilin signature. / Profilin / Profilin / Profilin / Profilin superfamily
Similarity search - Domain/homology
Biological speciesDermatophagoides pteronyssinus (European house dust mite)
synthetic construct (others)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.397 Å
AuthorsO'Malley, A. / Sankaran, S. / Chruszcz, M.
Funding support United States, 1items
OrganizationGrant numberCountry
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)R01AI077653 United States
CitationJournal: Biol.Chem. / Year: 2024
Title: Structural homology of mite profilins to plant profilins is not indicative of allergic cross-reactivity.
Authors: O'Malley, A. / Sankaran, S. / Carriuolo, A. / Khatri, K. / Kowal, K. / Chruszcz, M.
History
DepositionJul 19, 2023Deposition site: RCSB / Processing site: RCSB
Revision 1.0May 8, 2024Provider: repository / Type: Initial release

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
A: Profilin
C: Profilin
E: Profilin
G: Profilin
I: Profilin
K: Profilin
M: Profilin
O: Profilin
B: poly(L-proline)
D: poly(L-proline)
F: poly(L-proline)
H: poly(L-proline)
J: poly(L-proline)
L: poly(L-proline)
N: poly(L-proline)
P: poly(L-proline)
hetero molecules


Theoretical massNumber of molelcules
Total (without water)146,21128
Polymers145,05816
Non-polymers1,15312
Water2,900161
1
A: Profilin
B: poly(L-proline)
hetero molecules


Theoretical massNumber of molelcules
Total (without water)18,4205
Polymers18,1322
Non-polymers2883
Water181
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
MethodPISA
2
C: Profilin
D: poly(L-proline)


Theoretical massNumber of molelcules
Total (without water)18,1322
Polymers18,1322
Non-polymers00
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
MethodPISA
3
E: Profilin
F: poly(L-proline)


Theoretical massNumber of molelcules
Total (without water)18,1322
Polymers18,1322
Non-polymers00
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
MethodPISA
4
G: Profilin
H: poly(L-proline)
hetero molecules


Theoretical massNumber of molelcules
Total (without water)18,2283
Polymers18,1322
Non-polymers961
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
MethodPISA
5
I: Profilin
J: poly(L-proline)
hetero molecules


Theoretical massNumber of molelcules
Total (without water)18,3244
Polymers18,1322
Non-polymers1922
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
MethodPISA
6
K: Profilin
L: poly(L-proline)
hetero molecules


Theoretical massNumber of molelcules
Total (without water)18,3244
Polymers18,1322
Non-polymers1922
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
MethodPISA
7
M: Profilin
N: poly(L-proline)
hetero molecules


Theoretical massNumber of molelcules
Total (without water)18,3244
Polymers18,1322
Non-polymers1922
Water181
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
MethodPISA
8
O: Profilin
P: poly(L-proline)
hetero molecules


Theoretical massNumber of molelcules
Total (without water)18,3244
Polymers18,1322
Non-polymers1922
Water181
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
MethodPISA
Unit cell
Length a, b, c (Å)152.802, 152.802, 186.854
Angle α, β, γ (deg.)90.000, 90.000, 120.000
Int Tables number146
Space group name H-MH3
Components on special symmetry positions
IDModelComponents
11I-201-

SO4

21I-312-

HOH

Noncrystallographic symmetry (NCS)NCS domain:
IDEns-IDDetails
11A
21A
32A
42A
53A
63A
74A
84A
95A
105A
116A
126A
137A
147A
158A
168A
179A
189A
1910A
2010A
2111A
2211A
2312A
2412A
2513A
2613A
2714A
2814A
2915A
3015A
3116A
3216A
3317A
3417A
3518A
3618A
3719A
3819A
3920A
4020A
4121A
4221A
4322A
4422A
4523A
4623A
4724A
4824A
4925A
5025A
5126A
5226A
5327A
5427A
5528A
5628A
5729A
5829A
5930A
6030A
6131A
6231A
6332A
6432A
6533A
6633A
6734A
6834A
6935A
7035A
7136A
7236A
7337A
7437A
7538A
7638A
7739A
7839A
7940A
8040A
8141A
8241A
8342A
8442A
8543A
8643A
8744A
8844A
8945A
9045A
9146A
9246A
9347A
9447A
9548A
9648A
9749A
9849A
9950A
10050A
10151A
10251A
10352A
10452A
10553A
10653A
10754A
10854A
10955A
11055A
11156A
11256A

NCS domain segments:

Auth asym-ID: A / Label asym-ID: A

Dom-IDComponent-IDEns-IDBeg auth comp-IDBeg label comp-IDEnd auth comp-IDEnd label comp-IDAuth seq-IDLabel seq-ID
111GLYGLYASNASN1 - 12925 - 153
211GLYGLYASNASN1 - 12925 - 153
322SERSERASNASN0 - 12924 - 153
422SERSERASNASN0 - 12924 - 153
533GLYGLYTYRTYR-1 - 13023 - 154
633GLYGLYTYRTYR-1 - 13023 - 154
744SERSERASNASN0 - 12924 - 153
844SERSERASNASN0 - 12924 - 153
955GLYGLYTYRTYR-1 - 13023 - 154
1055GLYGLYTYRTYR-1 - 13023 - 154
1166SERSERASNASN0 - 12924 - 153
1266SERSERASNASN0 - 12924 - 153
1377GLYGLYASNASN1 - 12925 - 153
1477GLYGLYASNASN1 - 12925 - 153
1588GLYGLYASNASN1 - 12925 - 153
1688GLYGLYASNASN1 - 12925 - 153
1799GLYGLYASNASN1 - 12925 - 153
1899GLYGLYASNASN1 - 12925 - 153
191010GLYGLYASNASN1 - 12925 - 153
201010GLYGLYASNASN1 - 12925 - 153
211111GLYGLYASNASN1 - 12925 - 153
221111GLYGLYASNASN1 - 12925 - 153
231212GLYGLYASNASN1 - 12925 - 153
241212GLYGLYASNASN1 - 12925 - 153
251313GLYGLYTYRTYR1 - 13025 - 154
261313GLYGLYTYRTYR1 - 13025 - 154
271414SERSERASNASN0 - 12924 - 153
281414SERSERASNASN0 - 12924 - 153
291515SERSERTYRTYR0 - 13024 - 154
301515SERSERTYRTYR0 - 13024 - 154
311616SERSERASNASN0 - 12924 - 153
321616SERSERASNASN0 - 12924 - 153
331717SERSERTYRTYR0 - 13024 - 154
341717SERSERTYRTYR0 - 13024 - 154
351818GLYGLYASNASN1 - 12925 - 153
361818GLYGLYASNASN1 - 12925 - 153
371919SERSERASNASN0 - 12924 - 153
381919SERSERASNASN0 - 12924 - 153
392020GLYGLYTYRTYR-1 - 13023 - 154
402020GLYGLYTYRTYR-1 - 13023 - 154
412121SERSERASNASN0 - 12924 - 153
422121SERSERASNASN0 - 12924 - 153
432222GLYGLYASNASN1 - 12925 - 153
442222GLYGLYASNASN1 - 12925 - 153
452323SERSERASNASN0 - 12924 - 153
462323SERSERASNASN0 - 12924 - 153
472424SERSERTYRTYR0 - 13024 - 154
482424SERSERTYRTYR0 - 13024 - 154
492525GLYGLYASNASN1 - 12925 - 153
502525GLYGLYASNASN1 - 12925 - 153
512626SERSERASNASN0 - 12924 - 153
522626SERSERASNASN0 - 12924 - 153
532727GLYGLYASNASN1 - 12925 - 153
542727GLYGLYASNASN1 - 12925 - 153
552828GLYGLYASNASN1 - 12925 - 153
562828GLYGLYASNASN1 - 12925 - 153
572929GLYGLYCYSCYS1 - 1225 - 36
582929GLYGLYCYSCYS1 - 1225 - 36
593030GLYGLYCYSCYS1 - 1225 - 36
603030GLYGLYCYSCYS1 - 1225 - 36
613131GLYGLYCYSCYS1 - 1225 - 36
623131GLYGLYCYSCYS1 - 1225 - 36
633232GLYGLYCYSCYS1 - 1225 - 36
643232GLYGLYCYSCYS1 - 1225 - 36
653333GLYGLYCYSCYS1 - 1225 - 36
663333GLYGLYCYSCYS1 - 1225 - 36
673434GLYGLYCYSCYS1 - 1225 - 36
683434GLYGLYCYSCYS1 - 1225 - 36
693535GLYGLYCYSCYS1 - 1225 - 36
703535GLYGLYCYSCYS1 - 1225 - 36
713636GLYGLYCYSCYS1 - 1225 - 36
723636GLYGLYCYSCYS1 - 1225 - 36
733737GLYGLYCYSCYS1 - 1225 - 36
743737GLYGLYCYSCYS1 - 1225 - 36
753838GLYGLYCYSCYS1 - 1225 - 36
763838GLYGLYCYSCYS1 - 1225 - 36
773939GLYGLYCYSCYS1 - 1225 - 36
783939GLYGLYCYSCYS1 - 1225 - 36
794040GLYGLYCYSCYS1 - 1225 - 36
804040GLYGLYCYSCYS1 - 1225 - 36
814141GLYGLYCYSCYS1 - 1225 - 36
824141GLYGLYCYSCYS1 - 1225 - 36
834242GLYGLYCYSCYS1 - 1225 - 36
844242GLYGLYCYSCYS1 - 1225 - 36
854343GLYGLYCYSCYS1 - 1225 - 36
864343GLYGLYCYSCYS1 - 1225 - 36
874444GLYGLYCYSCYS1 - 1225 - 36
884444GLYGLYCYSCYS1 - 1225 - 36
894545GLYGLYCYSCYS1 - 1225 - 36
904545GLYGLYCYSCYS1 - 1225 - 36
914646GLYGLYCYSCYS1 - 1225 - 36
924646GLYGLYCYSCYS1 - 1225 - 36
934747GLYGLYCYSCYS1 - 1225 - 36
944747GLYGLYCYSCYS1 - 1225 - 36
954848GLYGLYCYSCYS1 - 1225 - 36
964848GLYGLYCYSCYS1 - 1225 - 36
974949GLYGLYCYSCYS1 - 1225 - 36
984949GLYGLYCYSCYS1 - 1225 - 36
995050GLYGLYCYSCYS1 - 1225 - 36
1005050GLYGLYCYSCYS1 - 1225 - 36
1015151GLYGLYCYSCYS1 - 1225 - 36
1025151GLYGLYCYSCYS1 - 1225 - 36
1035252GLYGLYCYSCYS1 - 1225 - 36
1045252GLYGLYCYSCYS1 - 1225 - 36
1055353GLYGLYCYSCYS1 - 1225 - 36
1065353GLYGLYCYSCYS1 - 1225 - 36
1075454GLYGLYCYSCYS1 - 1225 - 36
1085454GLYGLYCYSCYS1 - 1225 - 36
1095555GLYGLYCYSCYS1 - 1225 - 36
1105555GLYGLYCYSCYS1 - 1225 - 36
1115656GLYGLYCYSCYS1 - 1225 - 36
1125656GLYGLYCYSCYS1 - 1225 - 36

NCS ensembles :
IDDetails
1Local NCS retraints between domains: 1 2
2Local NCS retraints between domains: 3 4
3Local NCS retraints between domains: 5 6
4Local NCS retraints between domains: 7 8
5Local NCS retraints between domains: 9 10
6Local NCS retraints between domains: 11 12
7Local NCS retraints between domains: 13 14
8Local NCS retraints between domains: 15 16
9Local NCS retraints between domains: 17 18
10Local NCS retraints between domains: 19 20
11Local NCS retraints between domains: 21 22
12Local NCS retraints between domains: 23 24
13Local NCS retraints between domains: 25 26
14Local NCS retraints between domains: 27 28
15Local NCS retraints between domains: 29 30
16Local NCS retraints between domains: 31 32
17Local NCS retraints between domains: 33 34
18Local NCS retraints between domains: 35 36
19Local NCS retraints between domains: 37 38
20Local NCS retraints between domains: 39 40
21Local NCS retraints between domains: 41 42
22Local NCS retraints between domains: 43 44
23Local NCS retraints between domains: 45 46
24Local NCS retraints between domains: 47 48
25Local NCS retraints between domains: 49 50
26Local NCS retraints between domains: 51 52
27Local NCS retraints between domains: 53 54
28Local NCS retraints between domains: 55 56
29Local NCS retraints between domains: 57 58
30Local NCS retraints between domains: 59 60
31Local NCS retraints between domains: 61 62
32Local NCS retraints between domains: 63 64
33Local NCS retraints between domains: 65 66
34Local NCS retraints between domains: 67 68
35Local NCS retraints between domains: 69 70
36Local NCS retraints between domains: 71 72
37Local NCS retraints between domains: 73 74
38Local NCS retraints between domains: 75 76
39Local NCS retraints between domains: 77 78
40Local NCS retraints between domains: 79 80
41Local NCS retraints between domains: 81 82
42Local NCS retraints between domains: 83 84
43Local NCS retraints between domains: 85 86
44Local NCS retraints between domains: 87 88
45Local NCS retraints between domains: 89 90
46Local NCS retraints between domains: 91 92
47Local NCS retraints between domains: 93 94
48Local NCS retraints between domains: 95 96
49Local NCS retraints between domains: 97 98
50Local NCS retraints between domains: 99 100
51Local NCS retraints between domains: 101 102
52Local NCS retraints between domains: 103 104
53Local NCS retraints between domains: 105 106
54Local NCS retraints between domains: 107 108
55Local NCS retraints between domains: 109 110
56Local NCS retraints between domains: 111 112

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Components

#1: Protein
Profilin /


Mass: 16948.895 Da / Num. of mol.: 8
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Dermatophagoides pteronyssinus (European house dust mite)
Gene: LOC113791125 / Production host: Escherichia coli (E. coli) / References: UniProt: A0A2L0EBJ5
#2: Protein/peptide
poly(L-proline)


Mass: 1183.393 Da / Num. of mol.: 8 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others)
#3: Chemical
ChemComp-SO4 / SULFATE ION / Sulfate


Mass: 96.063 Da / Num. of mol.: 12 / Source method: obtained synthetically / Formula: SO4
#4: Water ChemComp-HOH / water / Water


Mass: 18.015 Da / Num. of mol.: 161 / Source method: isolated from a natural source / Formula: H2O
Has ligand of interestN

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 2.89 Å3/Da / Density % sol: 57.5 %
Crystal growTemperature: 298 K / Method: vapor diffusion, sitting drop / Details: 0.1 M BIS-TRIS pH 6.5, 2 M ammonium sulfate

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Data collection

DiffractionMean temperature: 100 K / Serial crystal experiment: N
Diffraction sourceSource: SYNCHROTRON / Site: APS / Beamline: 22-ID / Wavelength: 1 Å
DetectorType: DECTRIS EIGER X 16M / Detector: PIXEL / Date: Apr 13, 2022
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 1 Å / Relative weight: 1
Reflection twin
TypeCrystal-IDIDOperatorDomain-IDFraction
pseudo-merohedral11H, K, L10.2356
pseudo-merohedral22K, H, -L20.0842
pseudo-merohedral33-1/3H-2/3K-2/3L, -2/3H-1/3K+2/3L, -2/3H+2/3K-1/3L30.1611
pseudo-merohedral44-2/3H-1/3K+2/3L, -1/3H-2/3K-2/3L, 2/3H-2/3K+1/3L40.1219
pseudo-merohedral551/3H-1/3K+2/3L, -H, -2/3H-4/3K-1/3L50.0759
pseudo-merohedral66-K, -1/3H+1/3K-2/3L, 4/3H+2/3K-1/3L60.0686
pseudo-merohedral77-1/3H+1/3K-2/3L, -K, -4/3H-2/3K+1/3L70.1329
pseudo-merohedral88-H, 1/3H-1/3K+2/3L, 2/3H+4/3K+1/3L80.1198
ReflectionResolution: 2.397→40 Å / Num. obs: 63158 / % possible obs: 99.4 % / Observed criterion σ(I): -3 / Redundancy: 4.9 % / CC1/2: 0.999 / CC star: 1 / Rmerge(I) obs: 0.069 / Rpim(I) all: 0.036 / Rrim(I) all: 0.078 / Rsym value: 0.069 / Net I/σ(I): 30.4
Reflection shellResolution: 2.4→2.44 Å / Redundancy: 5.2 % / Rmerge(I) obs: 0.662 / Mean I/σ(I) obs: 2.1 / Num. unique obs: 3136 / CC1/2: 0.687 / CC star: 0.902 / Rpim(I) all: 0.318 / Rrim(I) all: 0.735 / Rsym value: 0.662 / % possible all: 99.7

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Processing

Software
NameVersionClassification
REFMAC5.8.0415refinement
HKL-3000data reduction
HKL-3000data scaling
MOLREPphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT / Resolution: 2.397→34.161 Å / Cor.coef. Fo:Fc: 0.969 / Cor.coef. Fo:Fc free: 0.966 / SU B: 8.1 / SU ML: 0.134 / Cross valid method: FREE R-VALUE / ESU R: 0.051 / ESU R Free: 0.039
Details: Hydrogens have been added in their riding positions
RfactorNum. reflection% reflection
Rfree0.1948 3203 5.073 %
Rwork0.1657 59930 -
all0.167 --
obs-63133 98.846 %
Solvent computationIon probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK BULK SOLVENT
Displacement parametersBiso mean: 74.893 Å2
Baniso -1Baniso -2Baniso -3
1--16.148 Å2-0 Å2-0 Å2
2---16.148 Å2-0 Å2
3---32.297 Å2
Refinement stepCycle: LAST / Resolution: 2.397→34.161 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms8608 0 60 161 8829
Refine LS restraints
Refine-IDTypeDev idealDev ideal targetNumber
X-RAY DIFFRACTIONr_bond_refined_d0.0080.0128864
X-RAY DIFFRACTIONr_bond_other_d0.0010.0168201
X-RAY DIFFRACTIONr_angle_refined_deg1.3731.66412137
X-RAY DIFFRACTIONr_angle_other_deg1.0571.57418964
X-RAY DIFFRACTIONr_dihedral_angle_1_deg6.60951129
X-RAY DIFFRACTIONr_dihedral_angle_2_deg6.959540
X-RAY DIFFRACTIONr_dihedral_angle_3_deg12.676101310
X-RAY DIFFRACTIONr_dihedral_angle_6_deg13.94710374
X-RAY DIFFRACTIONr_chiral_restr0.0680.21352
X-RAY DIFFRACTIONr_chiral_restr_other1.5370.28
X-RAY DIFFRACTIONr_gen_planes_refined0.0060.0210567
X-RAY DIFFRACTIONr_gen_planes_other0.0070.021873
X-RAY DIFFRACTIONr_nbd_refined0.2070.21616
X-RAY DIFFRACTIONr_symmetry_nbd_other0.2290.27329
X-RAY DIFFRACTIONr_nbtor_refined0.1770.24297
X-RAY DIFFRACTIONr_symmetry_nbtor_other0.0840.24666
X-RAY DIFFRACTIONr_xyhbond_nbd_refined0.1470.2308
X-RAY DIFFRACTIONr_symmetry_xyhbond_nbd_other0.0440.24
X-RAY DIFFRACTIONr_symmetry_nbd_refined0.2420.213
X-RAY DIFFRACTIONr_nbd_other0.2250.248
X-RAY DIFFRACTIONr_mcbond_it6.3165.1994564
X-RAY DIFFRACTIONr_mcbond_other6.3145.1994564
X-RAY DIFFRACTIONr_mcangle_it8.7159.3325677
X-RAY DIFFRACTIONr_mcangle_other8.7149.3335678
X-RAY DIFFRACTIONr_scbond_it6.2215.3994300
X-RAY DIFFRACTIONr_scbond_other6.1795.3994253
X-RAY DIFFRACTIONr_scangle_it8.5989.8236460
X-RAY DIFFRACTIONr_scangle_other8.6069.8286389
X-RAY DIFFRACTIONr_lrange_it10.97747.1769311
X-RAY DIFFRACTIONr_lrange_other10.97647.1799312
X-RAY DIFFRACTIONr_ncsr_local_group_10.0990.053822
X-RAY DIFFRACTIONr_ncsr_local_group_20.1020.053834
X-RAY DIFFRACTIONr_ncsr_local_group_30.1020.053846
X-RAY DIFFRACTIONr_ncsr_local_group_40.1080.053800
X-RAY DIFFRACTIONr_ncsr_local_group_50.1090.053872
X-RAY DIFFRACTIONr_ncsr_local_group_60.1030.053816
X-RAY DIFFRACTIONr_ncsr_local_group_70.1060.053756
X-RAY DIFFRACTIONr_ncsr_local_group_80.0960.053842
X-RAY DIFFRACTIONr_ncsr_local_group_90.0940.053772
X-RAY DIFFRACTIONr_ncsr_local_group_100.0930.053825
X-RAY DIFFRACTIONr_ncsr_local_group_110.0960.053837
X-RAY DIFFRACTIONr_ncsr_local_group_120.0910.053838
X-RAY DIFFRACTIONr_ncsr_local_group_130.0950.053878
X-RAY DIFFRACTIONr_ncsr_local_group_140.0960.053765
X-RAY DIFFRACTIONr_ncsr_local_group_150.1090.053862
X-RAY DIFFRACTIONr_ncsr_local_group_160.0950.053843
X-RAY DIFFRACTIONr_ncsr_local_group_170.0970.053906
X-RAY DIFFRACTIONr_ncsr_local_group_180.0990.053792
X-RAY DIFFRACTIONr_ncsr_local_group_190.1040.053764
X-RAY DIFFRACTIONr_ncsr_local_group_200.0960.053876
X-RAY DIFFRACTIONr_ncsr_local_group_210.10.053736
X-RAY DIFFRACTIONr_ncsr_local_group_220.1020.053759
X-RAY DIFFRACTIONr_ncsr_local_group_230.1020.053842
X-RAY DIFFRACTIONr_ncsr_local_group_240.1060.053875
X-RAY DIFFRACTIONr_ncsr_local_group_250.0990.053812
X-RAY DIFFRACTIONr_ncsr_local_group_260.1020.053817
X-RAY DIFFRACTIONr_ncsr_local_group_270.0950.053803
X-RAY DIFFRACTIONr_ncsr_local_group_280.0970.053781
X-RAY DIFFRACTIONr_ncsr_local_group_290.0720.05247
X-RAY DIFFRACTIONr_ncsr_local_group_300.0660.05247
X-RAY DIFFRACTIONr_ncsr_local_group_310.060.05248
X-RAY DIFFRACTIONr_ncsr_local_group_320.0160.05250
X-RAY DIFFRACTIONr_ncsr_local_group_330.0360.05252
X-RAY DIFFRACTIONr_ncsr_local_group_340.0230.05250
X-RAY DIFFRACTIONr_ncsr_local_group_350.1320.05248
X-RAY DIFFRACTIONr_ncsr_local_group_360.0720.05246
X-RAY DIFFRACTIONr_ncsr_local_group_370.10.05244
X-RAY DIFFRACTIONr_ncsr_local_group_380.070.05248
X-RAY DIFFRACTIONr_ncsr_local_group_390.0710.05248
X-RAY DIFFRACTIONr_ncsr_local_group_400.070.05247
X-RAY DIFFRACTIONr_ncsr_local_group_410.1480.05246
X-RAY DIFFRACTIONr_ncsr_local_group_420.0890.05244
X-RAY DIFFRACTIONr_ncsr_local_group_430.0630.05245
X-RAY DIFFRACTIONr_ncsr_local_group_440.0660.05248
X-RAY DIFFRACTIONr_ncsr_local_group_450.0580.05246
X-RAY DIFFRACTIONr_ncsr_local_group_460.140.05246
X-RAY DIFFRACTIONr_ncsr_local_group_470.0620.05248
X-RAY DIFFRACTIONr_ncsr_local_group_480.0660.05248
X-RAY DIFFRACTIONr_ncsr_local_group_490.0630.05247
X-RAY DIFFRACTIONr_ncsr_local_group_500.1450.05247
X-RAY DIFFRACTIONr_ncsr_local_group_510.0240.05252
X-RAY DIFFRACTIONr_ncsr_local_group_520.0230.05251
X-RAY DIFFRACTIONr_ncsr_local_group_530.130.05252
X-RAY DIFFRACTIONr_ncsr_local_group_540.0320.05252
X-RAY DIFFRACTIONr_ncsr_local_group_550.1330.05251
X-RAY DIFFRACTIONr_ncsr_local_group_560.1320.05249
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-IDRefine-IDTypeRms dev position (Å)Weight position
11AX-RAY DIFFRACTIONLocal ncs0.098650.0501
12AX-RAY DIFFRACTIONLocal ncs0.098650.0501
23AX-RAY DIFFRACTIONLocal ncs0.101680.05009
24AX-RAY DIFFRACTIONLocal ncs0.101680.05009
35AX-RAY DIFFRACTIONLocal ncs0.102440.05009
36AX-RAY DIFFRACTIONLocal ncs0.102440.05009
47AX-RAY DIFFRACTIONLocal ncs0.107730.05009
48AX-RAY DIFFRACTIONLocal ncs0.107730.05009
59AX-RAY DIFFRACTIONLocal ncs0.10870.05009
510AX-RAY DIFFRACTIONLocal ncs0.10870.05009
611AX-RAY DIFFRACTIONLocal ncs0.103470.05009
612AX-RAY DIFFRACTIONLocal ncs0.103470.05009
713AX-RAY DIFFRACTIONLocal ncs0.106090.05009
714AX-RAY DIFFRACTIONLocal ncs0.106090.05009
815AX-RAY DIFFRACTIONLocal ncs0.096070.0501
816AX-RAY DIFFRACTIONLocal ncs0.096070.0501
917AX-RAY DIFFRACTIONLocal ncs0.094180.0501
918AX-RAY DIFFRACTIONLocal ncs0.094180.0501
1019AX-RAY DIFFRACTIONLocal ncs0.093170.0501
1020AX-RAY DIFFRACTIONLocal ncs0.093170.0501
1121AX-RAY DIFFRACTIONLocal ncs0.096450.05009
1122AX-RAY DIFFRACTIONLocal ncs0.096450.05009
1223AX-RAY DIFFRACTIONLocal ncs0.090660.05009
1224AX-RAY DIFFRACTIONLocal ncs0.090660.05009
1325AX-RAY DIFFRACTIONLocal ncs0.095150.0501
1326AX-RAY DIFFRACTIONLocal ncs0.095150.0501
1427AX-RAY DIFFRACTIONLocal ncs0.095740.05009
1428AX-RAY DIFFRACTIONLocal ncs0.095740.05009
1529AX-RAY DIFFRACTIONLocal ncs0.108740.05009
1530AX-RAY DIFFRACTIONLocal ncs0.108740.05009
1631AX-RAY DIFFRACTIONLocal ncs0.095370.05009
1632AX-RAY DIFFRACTIONLocal ncs0.095370.05009
1733AX-RAY DIFFRACTIONLocal ncs0.096570.05009
1734AX-RAY DIFFRACTIONLocal ncs0.096570.05009
1835AX-RAY DIFFRACTIONLocal ncs0.099240.05009
1836AX-RAY DIFFRACTIONLocal ncs0.099240.05009
1937AX-RAY DIFFRACTIONLocal ncs0.104330.05009
1938AX-RAY DIFFRACTIONLocal ncs0.104330.05009
2039AX-RAY DIFFRACTIONLocal ncs0.096450.05009
2040AX-RAY DIFFRACTIONLocal ncs0.096450.05009
2141AX-RAY DIFFRACTIONLocal ncs0.100430.05009
2142AX-RAY DIFFRACTIONLocal ncs0.100430.05009
2243AX-RAY DIFFRACTIONLocal ncs0.102360.05009
2244AX-RAY DIFFRACTIONLocal ncs0.102360.05009
2345AX-RAY DIFFRACTIONLocal ncs0.101740.05009
2346AX-RAY DIFFRACTIONLocal ncs0.101740.05009
2447AX-RAY DIFFRACTIONLocal ncs0.105810.05009
2448AX-RAY DIFFRACTIONLocal ncs0.105810.05009
2549AX-RAY DIFFRACTIONLocal ncs0.099340.05009
2550AX-RAY DIFFRACTIONLocal ncs0.099340.05009
2651AX-RAY DIFFRACTIONLocal ncs0.102260.05009
2652AX-RAY DIFFRACTIONLocal ncs0.102260.05009
2753AX-RAY DIFFRACTIONLocal ncs0.095370.05009
2754AX-RAY DIFFRACTIONLocal ncs0.095370.05009
2855AX-RAY DIFFRACTIONLocal ncs0.09660.05009
2856AX-RAY DIFFRACTIONLocal ncs0.09660.05009
2957AX-RAY DIFFRACTIONLocal ncs0.072180.05005
2958AX-RAY DIFFRACTIONLocal ncs0.072180.05005
3059AX-RAY DIFFRACTIONLocal ncs0.066260.05005
3060AX-RAY DIFFRACTIONLocal ncs0.066260.05005
3161AX-RAY DIFFRACTIONLocal ncs0.060280.05004
3162AX-RAY DIFFRACTIONLocal ncs0.060280.05004
3263AX-RAY DIFFRACTIONLocal ncs0.016210.05005
3264AX-RAY DIFFRACTIONLocal ncs0.016210.05005
3365AX-RAY DIFFRACTIONLocal ncs0.03630.05006
3366AX-RAY DIFFRACTIONLocal ncs0.03630.05006
3467AX-RAY DIFFRACTIONLocal ncs0.022560.05005
3468AX-RAY DIFFRACTIONLocal ncs0.022560.05005
3569AX-RAY DIFFRACTIONLocal ncs0.131940.05005
3570AX-RAY DIFFRACTIONLocal ncs0.131940.05005
3671AX-RAY DIFFRACTIONLocal ncs0.072060.05005
3672AX-RAY DIFFRACTIONLocal ncs0.072060.05005
3773AX-RAY DIFFRACTIONLocal ncs0.099520.05004
3774AX-RAY DIFFRACTIONLocal ncs0.099520.05004
3875AX-RAY DIFFRACTIONLocal ncs0.070260.05006
3876AX-RAY DIFFRACTIONLocal ncs0.070260.05006
3977AX-RAY DIFFRACTIONLocal ncs0.071030.05006
3978AX-RAY DIFFRACTIONLocal ncs0.071030.05006
4079AX-RAY DIFFRACTIONLocal ncs0.06970.05006
4080AX-RAY DIFFRACTIONLocal ncs0.06970.05006
4181AX-RAY DIFFRACTIONLocal ncs0.148420.05006
4182AX-RAY DIFFRACTIONLocal ncs0.148420.05006
4283AX-RAY DIFFRACTIONLocal ncs0.089290.05004
4284AX-RAY DIFFRACTIONLocal ncs0.089290.05004
4385AX-RAY DIFFRACTIONLocal ncs0.062870.05004
4386AX-RAY DIFFRACTIONLocal ncs0.062870.05004
4487AX-RAY DIFFRACTIONLocal ncs0.066210.05005
4488AX-RAY DIFFRACTIONLocal ncs0.066210.05005
4589AX-RAY DIFFRACTIONLocal ncs0.057530.05005
4590AX-RAY DIFFRACTIONLocal ncs0.057530.05005
4691AX-RAY DIFFRACTIONLocal ncs0.140450.05005
4692AX-RAY DIFFRACTIONLocal ncs0.140450.05005
4793AX-RAY DIFFRACTIONLocal ncs0.061630.05005
4794AX-RAY DIFFRACTIONLocal ncs0.061630.05005
4895AX-RAY DIFFRACTIONLocal ncs0.065620.05005
4896AX-RAY DIFFRACTIONLocal ncs0.065620.05005
4997AX-RAY DIFFRACTIONLocal ncs0.063460.05004
4998AX-RAY DIFFRACTIONLocal ncs0.063460.05004
5099AX-RAY DIFFRACTIONLocal ncs0.145040.05005
50100AX-RAY DIFFRACTIONLocal ncs0.145040.05005
51101AX-RAY DIFFRACTIONLocal ncs0.023830.05006
51102AX-RAY DIFFRACTIONLocal ncs0.023830.05006
52103AX-RAY DIFFRACTIONLocal ncs0.023210.05006
52104AX-RAY DIFFRACTIONLocal ncs0.023210.05006
53105AX-RAY DIFFRACTIONLocal ncs0.129820.05007
53106AX-RAY DIFFRACTIONLocal ncs0.129820.05007
54107AX-RAY DIFFRACTIONLocal ncs0.032140.05007
54108AX-RAY DIFFRACTIONLocal ncs0.032140.05007
55109AX-RAY DIFFRACTIONLocal ncs0.133250.05006
55110AX-RAY DIFFRACTIONLocal ncs0.133250.05006
56111AX-RAY DIFFRACTIONLocal ncs0.132480.05006
56112AX-RAY DIFFRACTIONLocal ncs0.132480.05006
LS refinement shell
Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
2.397-2.4590.4821730.3024187X-RAY DIFFRACTION91.8862
2.459-2.5260.3812060.2534325X-RAY DIFFRACTION99.2335
2.526-2.5990.272520.2364253X-RAY DIFFRACTION100.7379
2.599-2.6790.2192270.2364106X-RAY DIFFRACTION99.7697
2.679-2.7660.2362480.1983953X-RAY DIFFRACTION99.4084
2.766-2.8630.2851840.1913840X-RAY DIFFRACTION100.1493
2.863-2.970.1942160.1823701X-RAY DIFFRACTION99.1897
2.97-3.0910.2091890.1853571X-RAY DIFFRACTION100.0798
3.091-3.2270.1862360.1833453X-RAY DIFFRACTION100.6548
3.227-3.3840.2481600.173258X-RAY DIFFRACTION99.4183
3.384-3.5650.2412260.1753038X-RAY DIFFRACTION99.6337
3.565-3.780.1331490.162892X-RAY DIFFRACTION96.5703
3.78-4.0380.1641610.1572660X-RAY DIFFRACTION97.2759
4.038-4.3580.1531630.1332539X-RAY DIFFRACTION98.9019
4.358-4.7680.102680.1342449X-RAY DIFFRACTION99.2899
4.768-5.3210.2631280.1252140X-RAY DIFFRACTION100.0441
5.321-6.1270.182680.1811941X-RAY DIFFRACTION100
6.127-7.460.303330.1451659X-RAY DIFFRACTION99.588
7.46-10.3710.118640.1341251X-RAY DIFFRACTION97.6969
10.371-34.1610.145520.179714X-RAY DIFFRACTION98.4576
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
11.64660.1818-0.88272.5105-0.68111.84230.06130.06660.0138-0.3124-0.16310.41540.1221-0.31380.10170.0606-0.0137-0.09880.1888-0.0690.473920.49537.4920.684
24.1424-2.3823.03913.713-5.69328.91750.40270.1471-0.39950.0117-0.19690.2027-0.16530.2955-0.20580.15540.0279-0.04910.0364-0.04340.233730.78530.694-10.365
30.7166-0.18710.07430.49420.00352.1533-0.01360.0471-0.1233-0.17310.1167-0.10120.2870.5642-0.10310.15420.06860.03090.2274-0.07990.598617.31276.716-27.265
46.7057-5.06851.57395.3562-2.90462.33480.51610.27880.0564-0.4542-0.22120.15040.13220.0456-0.2950.3845-0.02560.02860.147-0.03640.36256.54268.991-37.372
51.03650.10860.51882.7132-0.46322.902-0.3187-0.30450.03960.17110.15150.1095-0.1445-0.35870.16730.14620.09660.1170.1159-0.04280.45044.44841.687-31.707
60.69110.1211-0.23883.13555.616215.2729-0.18250.0497-0.0766-0.09320.04180.2882-0.304-0.08640.14070.08470.01540.00080.07930.05480.26953.78656.753-40.004
72.5163-0.38860.03151.0341-0.37911.84220.03060.2662-0.2735-0.02650.13120.21860.1852-0.0756-0.16180.1264-0.0873-0.03670.1516-0.08650.50824.28920.927-60.74
88.561810.4810.454415.56071.67560.4931-0.20850.22620.0722-0.34750.13790.3244-0.0699-0.03060.07070.076-0.02770.00630.12780.03560.2177-8.96426.136-51.739
90.5374-0.72710.90832.511-0.59952.1329-0.0006-0.0911-0.2880.25920.21510.18910.1642-0.0761-0.21440.2012-0.04050.06060.05310.06720.55615.61413.67-35.576
102.65053.94720.060614.4873-0.01420.01540.2564-0.1512-0.11770.4928-0.25480.44490.00520.0491-0.00160.1843-0.0071-0.03050.22260.05260.291626.9215.553-44.373
111.6215-0.0563-0.25990.68150.51022.1813-0.1391-0.182-0.14720.10070.04910.05360.62620.04690.09010.24450.0183-0.02750.03160.08130.53940.15467.517-6.129
122.7823-5.5098-0.805711.65240.51532.5677-0.2814-0.3090.15650.42580.4756-0.2615-0.07310.4232-0.19430.21770.0349-0.00170.202-0.01110.228812.7372.3443.844
130.7671-0.2850.73571.55-0.01212.3886-0.3081-0.03870.24140.12570.155-0.1989-0.30030.18440.15310.1835-0.0496-0.09140.1127-0.07240.50832.85144.977-33.87
146.0232.10492.61571.55263.837311.6794-0.4949-0.24970.6363-0.3682-0.1540.3323-0.7697-0.44180.64890.3236-0.0867-0.08620.21460.07510.493133.53332.332-22.936
151.7604-0.53840.15411.60090.64020.4499-0.0063-0.0360.2695-0.4228-0.12380.0748-0.2369-0.04480.130.1660.07370.00750.14440.12170.521436.8260.727-1.761
162.769-0.43953.09821.2792-2.849913.68410.21040.18350.31350.0057-0.2550.0523-0.34260.04670.04470.12450.10180.04860.1460.020.331224.83268.3736.867
Refinement TLS groupSelection: ALL

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