+Open data
-Basic information
Entry | Database: PDB / ID: 4c5q | ||||||
---|---|---|---|---|---|---|---|
Title | measles virus phosphoprotein tetramerization domain | ||||||
Components | PHOSPHOPROTEIN | ||||||
Keywords | VIRAL PROTEIN / OLIGOMERIZATION DOMAIN | ||||||
Function / homology | Function and homology information viral genome replication / RNA-dependent RNA polymerase activity / DNA-templated transcription / RNA binding Similarity search - Function | ||||||
Biological species | MEASLES VIRUS | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.2 Å | ||||||
Authors | Blocquel, D. / Habchi, J. / Durand, E. / Sevajol, M. / Ferron, F. / Papageorgiou, N. / Longhi, S. | ||||||
Citation | Journal: Acta Crystallogr.,Sect.D / Year: 2014 Title: Coiled-Coil Deformations in Crystal Structures: The Measles Virus Phosphoprotein Multimerization Domain as an Illustrative Example. Authors: Blocquel, D. / Habchi, J. / Durand, E. / Sevajol, M. / Ferron, F. / Erales, J. / Papageorgiou, N. / Longhi, S. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 4c5q.cif.gz | 100 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb4c5q.ent.gz | 78.2 KB | Display | PDB format |
PDBx/mmJSON format | 4c5q.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/c5/4c5q ftp://data.pdbj.org/pub/pdb/validation_reports/c5/4c5q | HTTPS FTP |
---|
-Related structure data
Related structure data | 4bhvC 1ezjS S: Starting model for refinement C: citing same article (ref.) |
---|---|
Similar structure data |
-Links
-Assembly
Deposited unit |
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
2 |
| ||||||||
Unit cell |
|
-Components
#1: Protein | Mass: 9057.310 Da / Num. of mol.: 8 / Fragment: TETRAMERIZATION DOMAIN, RESIDUES 304-375 / Mutation: YES Source method: isolated from a genetically manipulated source Source: (gene. exp.) MEASLES VIRUS / Strain: EDMONSTON B / Production host: ESCHERICHIA COLI (E. coli) / Strain (production host): BL21(DE3) / Variant (production host): ROSETTA PLYSS / References: UniProt: P35974 #2: Water | ChemComp-HOH / | |
---|
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
---|
-Sample preparation
Crystal | Density Matthews: 2.24 Å3/Da / Density % sol: 45.17 % / Description: NONE |
---|---|
Crystal grow | pH: 9.5 / Details: 10% PEG 8000, 0.1 M NACL, 0.1 M CHES, PH 9.5 |
-Data collection
Diffraction | Mean temperature: 100 K |
---|---|
Diffraction source | Source: SYNCHROTRON / Site: SOLEIL / Beamline: PROXIMA 1 / Wavelength: 0.97911 |
Detector | Type: PIXEL PILATUS / Detector: PIXEL |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97911 Å / Relative weight: 1 |
Reflection | Resolution: 2.15→45.87 Å / Num. obs: 32947 / % possible obs: 96.3 % / Observed criterion σ(I): 2 / Redundancy: 3.3 % / Rmerge(I) obs: 0.1 / Net I/σ(I): 8.3 |
Reflection shell | Resolution: 2.15→2.27 Å / Redundancy: 3.1 % / Rmerge(I) obs: 0.58 / Mean I/σ(I) obs: 2.3 / % possible all: 88.7 |
-Processing
Software |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: PDB ENTRY 1EZJ Resolution: 2.2→34.125 Å / SU ML: 0.33 / σ(F): 1.98 / Phase error: 30.78 / Stereochemistry target values: ML
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 20.6 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.2→34.125 Å
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LS refinement shell |
|