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- EMDB-37231: Structure of African swine fever virus topoisomerase II in comple... -
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Open data
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Basic information
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Title | Structure of African swine fever virus topoisomerase II in complex with dsDNA | |||||||||
![]() | MAP | |||||||||
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![]() | topo 2 / ![]() | |||||||||
Function / homology | ![]() DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity / ![]() ![]() ![]() ![]() ![]() Similarity search - Function | |||||||||
Biological species | ![]() ![]() ![]() ![]() | |||||||||
Method | ![]() ![]() | |||||||||
![]() | Cong J / Xin Y / Li X / Chen Y | |||||||||
Funding support | 1 items
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![]() | ![]() Title: Structure of African swine fever virus topoisomerase II in complex with dsDNA Authors: Jingyuan C / Yuhui X / Xuemei L / Chen Y | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 446.1 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 15.3 KB 15.3 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 17.7 KB | Display | ![]() |
Images | ![]() | 23 KB | ||
Filedesc metadata | ![]() | 6 KB | ||
Others | ![]() ![]() | 382.5 MB 381.8 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8kgrMC ![]() 8kglC ![]() 8kgmC ![]() 8kgnC ![]() 8kgoC ![]() 8kgpC ![]() 8kgqC ![]() 8kgsC ![]() 8kgtC M: atomic model generated by this map C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
EMDB pages | ![]() ![]() |
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Related items in Molecule of the Month |
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Map
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Annotation | MAP | ||||||||||||||||||||
Voxel size | X=Y=Z: 0.65 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: HALFMAP
File | emd_37231_half_map_1.map | ||||||||||||
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Annotation | HALFMAP | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: HALFMAP
File | emd_37231_half_map_2.map | ||||||||||||
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Annotation | HALFMAP | ||||||||||||
Projections & Slices |
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Density Histograms |
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Sample components
-Entire : pP1192R
Entire | Name: pP1192R |
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Components |
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-Supramolecule #1: pP1192R
Supramolecule | Name: pP1192R / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1 / Details: dimer |
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Source (natural) | Organism: ![]() ![]() ![]() |
-Macromolecule #1: DNA (32-MER)
Macromolecule | Name: DNA (32-MER) / type: dna / ID: 1 / Number of copies: 1 / Classification: DNA |
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Source (natural) | Organism: ![]() |
Molecular weight | Theoretical: 16.058391 KDa |
Sequence | String: (DA)(DT)(DG)(DC)(DA)(DT)(DA)(DT)(DA)(DT) (DA)(DT)(DG)(DT)(DA)(DT)(DA)(DT)(DG)(DT) (DA)(DT)(DG)(DT)(DG)(DT)(DG)(DT)(DA) (DT)(DA)(DT)(DA)(DT)(DA)(DC)(DA)(DC)(DA) (DT) (DA)(DT)(DA)(DT)(DA)(DT) ...String: (DA)(DT)(DG)(DC)(DA)(DT)(DA)(DT)(DA)(DT) (DA)(DT)(DG)(DT)(DA)(DT)(DA)(DT)(DG)(DT) (DA)(DT)(DG)(DT)(DG)(DT)(DG)(DT)(DA) (DT)(DA)(DT)(DA)(DT)(DA)(DC)(DA)(DC)(DA) (DT) (DA)(DT)(DA)(DT)(DA)(DT)(DA)(DT) (DA)(DT)(DA)(DT) |
-Macromolecule #2: DNA (33-MER)
Macromolecule | Name: DNA (33-MER) / type: dna / ID: 2 / Number of copies: 1 / Classification: DNA |
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Source (natural) | Organism: ![]() |
Molecular weight | Theoretical: 15.965361 KDa |
Sequence | String: (DA)(DT)(DA)(DT)(DA)(DT)(DA)(DT)(DA)(DT) (DA)(DT)(DA)(DT)(DG)(DT)(DG)(DT)(DA)(DT) (DA)(DT)(DA)(DT)(DA)(DC)(DA)(DC)(DA) (DC)(DA)(DT)(DA)(DC)(DA)(DT)(DA)(DT)(DA) (DC) (DA)(DT)(DA)(DT)(DA)(DT) ...String: (DA)(DT)(DA)(DT)(DA)(DT)(DA)(DT)(DA)(DT) (DA)(DT)(DA)(DT)(DG)(DT)(DG)(DT)(DA)(DT) (DA)(DT)(DA)(DT)(DA)(DC)(DA)(DC)(DA) (DC)(DA)(DT)(DA)(DC)(DA)(DT)(DA)(DT)(DA) (DC) (DA)(DT)(DA)(DT)(DA)(DT)(DA)(DT) (DG)(DC)(DA)(DT) |
-Macromolecule #3: DNA topoisomerase 2
Macromolecule | Name: DNA topoisomerase 2 / type: protein_or_peptide / ID: 3 / Number of copies: 2 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() ![]() ![]() |
Molecular weight | Theoretical: 138.093359 KDa |
Recombinant expression | Organism: ![]() ![]() ![]() |
Sequence | String: EFATMEAFEI SDFKEHAKKK SMWAGALNKV TISGLMGVFT EDEDLMALPI HRDHCPALLK IFDEIIVNAT DHERACHNKT KKVTYIKIS FDKGVFSCEN DGPGIPIAKH EQASLIAKRD VYVPEVASCH FLAGTNINKA KDCIKGGTNG VGLKLAMVHS Q WAILTTAD ...String: EFATMEAFEI SDFKEHAKKK SMWAGALNKV TISGLMGVFT EDEDLMALPI HRDHCPALLK IFDEIIVNAT DHERACHNKT KKVTYIKIS FDKGVFSCEN DGPGIPIAKH EQASLIAKRD VYVPEVASCH FLAGTNINKA KDCIKGGTNG VGLKLAMVHS Q WAILTTAD GAQKYVQHIN QRLDIIEPPT ITPSREMFTR IELMPVYQEL GYAEPLSETE QADLSAWIYL RACQCAAYVG KG TTIYYND KPCRTGSVMA LAKMYTLLSA PNSTIHTATI KADAKPYSLH PLQVAAVVSP KFKKFEHVSV INGVNCVKGE HVT FLKKTI NEMVVKKFQQ TIKDKNRKTT LRDSCSNIFI VIVGSIPGIE WTGQRKDELS IAENVFKTHY SIPSSFLTSM TKSI VDILL QSISKKDNHK QVDVDKYTRA RNAGGKRAQD CMLLAAEGDS ALSLLRTGLT LGKSNPSGPS FDFCGMISLG GVIMN ACKK VTNITTDSGE TIMVRNEQLT NNKVLQGIVQ VLGLDFNCHY KTQEERAKLR YGCIVACVDQ DLDGCGKILG LLLAYF HLF WPQLIIHGFV KRLLTPLIRV YEKGKTMPVE FYYEQEFDAW AKKQTSLANH TVKYYKGLAA HDTHEVKSMF KHFDNMV YT FTLDDSAKEL FHIYFGGESE LRKRELCTGV VPLTETQTQS IHSVRRIPCS LHLQVDTKAY KLDAIERQIP NFLDGMTR A RRKILAGGVK CFASNNRERK VFQFGGYVAD HMFYHHGDMS LNTSIIKAAQ YYPGSSHLYP VFIGIGSFGS RHLGGKDAG SPRYISVQLA SEFIKTMFPA EDSWLLPYVF EDGQRAEPEY YVPVLPLAIM EYGANPSEGW KYTTWARQLE DILALVRAYV DKDNPKHEL LHYAIKHKIT ILPLRPSNYN FKGHLKRFGQ YYYSYGTYVI SEQRNIITIT ELPLRVPTVA YIESIKKSSN R MTFIEEII DYSSSETIEI LVKLKPNSLN RIVEEFKETE EQDSIENFLR LRNCLHSHLN FVKPKGGIIE FNTYYEILYA WL PYRRELY QKRLMREHAV LKLRIIMETA IVRYINESAE LNLSHYEDEK EASRILSEHG FPPLNHTLII SPEFASIEEL NQK ALQGCY TYILSLQARE LLIAAKTRRV EKIKKMQARL DKVEQLLQES PFPGASVWLE EIDAVEKAII KGRNTQWKFH ENLY FQGHH HHHHHH UniProtKB: ![]() |
-Macromolecule #4: MAGNESIUM ION
Macromolecule | Name: MAGNESIUM ION / type: ligand / ID: 4 / Number of copies: 2 / Formula: MG |
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Molecular weight | Theoretical: 24.305 Da |
-Experimental details
-Structure determination
Method | ![]() |
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Aggregation state | particle |
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Sample preparation
Buffer | pH: 7.2 |
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Vitrification | Cryogen name: ETHANE |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD![]() |
Image recording | Film or detector model: GATAN K2 SUMMIT (4k x 4k) / Average electron dose: 60.0 e/Å2 |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |