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- SASDDY8: Chicken ovalbumin gel at high pH (Ovalbumin, Ova) -

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Basic information

Entry
Database: SASBDB / ID: SASDDY8
SampleChicken ovalbumin gel at high pH
  • Ovalbumin (protein), Ova, Gallus gallus
Function / homology
Function and homology information


intracellular amino acid homeostasis / RUNX1 regulates transcription of genes involved in differentiation of keratinocytes / phagolysosome / monoatomic ion homeostasis / response to steroid hormone / embryo development ending in birth or egg hatching / response to corticosterone / monoatomic ion transport / phagocytic vesicle / response to progesterone ...intracellular amino acid homeostasis / RUNX1 regulates transcription of genes involved in differentiation of keratinocytes / phagolysosome / monoatomic ion homeostasis / response to steroid hormone / embryo development ending in birth or egg hatching / response to corticosterone / monoatomic ion transport / phagocytic vesicle / response to progesterone / early endosome lumen / Neutrophil degranulation / response to estrogen / vesicle / protease binding / intracellular membrane-bounded organelle / calcium ion binding / endoplasmic reticulum / extracellular space / extracellular region / cytosol
Similarity search - Function
Serpin, conserved site / Serpins signature. / Serpin superfamily, domain 2 / Serpin family / Serpin domain / Serpin superfamily / Serpin superfamily, domain 1 / Serpin (serine protease inhibitor) / SERine Proteinase INhibitors
Similarity search - Domain/homology
Biological speciesGallus gallus (chicken)
CitationDate: 2018 Jun 28
Title: The Proof Is in the Pidan: Generalizing Proteins as Patchy Particles
Authors: "Cai J", "Sweeney A"
Contact author
  • Jing Cai (Penn, University of Pennsylvania, Philadelphia, PA, United States)

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Structure visualization

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Models

Model #2125
Type: dummy / Software: (1.1.2) / Radius of dummy atoms: 3.20 A / Chi-square value: 3.038049 / P-value: 0.000296
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Chicken ovalbumin gel at high pH / Specimen concentration: 214 mg/ml
BufferName: 0.16 M NaOH / pH: 13.2
Entity #1155Name: Ova / Type: protein / Description: Ovalbumin / Formula weight: 42.75 / Num. of mol.: 1 / Source: Gallus gallus / References: UniProt: P01012
Sequence: GSIGAASMEF CFDVFKELKV HHANENIFYC PIAIMSALAM VYLGAKDSTR TQINKVVRFD KLPGFGDSIE AQCGTSVNVH SSLRDILNQI TKPNDVYSFS LASRLYAEER YPILPEYLQC VKELYRGGLE PINFQTAADQ ARELINSWVE SQTNGIIRNV LQPSSVDSQT ...Sequence:
GSIGAASMEF CFDVFKELKV HHANENIFYC PIAIMSALAM VYLGAKDSTR TQINKVVRFD KLPGFGDSIE AQCGTSVNVH SSLRDILNQI TKPNDVYSFS LASRLYAEER YPILPEYLQC VKELYRGGLE PINFQTAADQ ARELINSWVE SQTNGIIRNV LQPSSVDSQT AMVLVNAIVF KGLWEKAFKD EDTQAMPFRV TEQESKPVQM MYQIGLFRVA SMASEKMKIL ELPFASGTMS MLVLLPDEVS GLEQLESIIN FEKLTEWTSS NVMEERKIKV YLPRMKMEEK YNLTSVLMAM GITDVFSSSA NLSGISSAES LKISQAVHAA HAEINEAGRE VVGSAEAGVD AASVSEEFRA DHPFLFCIKH IATNAVLFFG RCVSP

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Experimental information

BeamInstrument name: National Synchrotron Light Source (NSLS) X9A
City: Brookhaven, NY / 国: USA / Type of source: X-ray synchrotronSynchrotron / Wavelength: 0.155 Å / Dist. spec. to detc.: 2 mm
DetectorName: Pilatus 300K / Type: 20Hz
Scan
Title: Chicken ovalbumin gel at high pH / Measurement date: Feb 21, 2014 / Storage temperature: 4 °C / Cell temperature: 10 °C / Exposure time: 120 sec. / Number of frames: 1 / Unit: 1/A /
MinMax
Q0.015 1
ResultExperimental MW: 43 kDa / Rg from PR: 2.1 nm / Type of curve: merged

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