+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDCK7 |
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Sample | Truncated monomeric Cytohesin-3 (Grp1; amino acids 63-399)
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Function / homology | Function and homology information Intra-Golgi traffic / regulation of ARF protein signal transduction / Golgi vesicle transport / establishment of epithelial cell polarity / phosphatidylinositol-3,4,5-trisphosphate binding / positive regulation of cell adhesion / bicellular tight junction / ruffle / guanyl-nucleotide exchange factor activity / adherens junction ...Intra-Golgi traffic / regulation of ARF protein signal transduction / Golgi vesicle transport / establishment of epithelial cell polarity / phosphatidylinositol-3,4,5-trisphosphate binding / positive regulation of cell adhesion / bicellular tight junction / ruffle / guanyl-nucleotide exchange factor activity / adherens junction / nucleoplasm / plasma membrane / cytosol / cytoplasm Similarity search - Function |
Biological species | Mus musculus (house mouse) |
Citation | Journal: Structure / Year: 2018 Title: Structural Dynamics Control Allosteric Activation of Cytohesin Family Arf GTPase Exchange Factors. Authors: Andrew W Malaby / Sanchaita Das / Srinivas Chakravarthy / Thomas C Irving / Osman Bilsel / David G Lambright / Abstract: Membrane dynamic processes including vesicle biogenesis depend on Arf guanosine triphosphatase (GTPase) activation by guanine nucleotide exchange factors (GEFs) containing a catalytic Sec7 domain and ...Membrane dynamic processes including vesicle biogenesis depend on Arf guanosine triphosphatase (GTPase) activation by guanine nucleotide exchange factors (GEFs) containing a catalytic Sec7 domain and a membrane-targeting module such as a pleckstrin homology (PH) domain. The catalytic output of cytohesin family Arf GEFs is controlled by autoinhibitory interactions that impede accessibility of the exchange site in the Sec7 domain. These restraints can be relieved through activator Arf-GTP binding to an allosteric site comprising the PH domain and proximal autoinhibitory elements (Sec7-PH linker and C-terminal helix). Small-angle X-ray scattering and negative-stain electron microscopy were used to investigate the structural organization and conformational dynamics of cytohesin-3 (Grp1) in autoinhibited and active states. The results support a model in which hinge dynamics in the autoinhibited state expose the activator site for Arf-GTP binding, while subsequent C-terminal helix unlatching and repositioning unleash conformational entropy in the Sec7-PH linker to drive exposure of the exchange site. |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Data source
SASBDB page | SASDCK7 |
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-Related structure data
-External links
Related items in Molecule of the Month |
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-Models
Model #1543 | Type: dummy / Software: (r2835) / Radius of dummy atoms: 2.30 A / Symmetry: P1 / Comment: Most representative of 100 dammif models / Chi-square value: 1.401856 / P-value: 0.021000 Search similar-shape structures of this assembly by Omokage search (details) |
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Model #1544 | Type: dummy / Software: (5.0) / Radius of dummy atoms: 2.50 A / Symmetry: P1 Comment: Filtered average of 10 filtered averages of 10 dammif models Chi-square value: 1.401856 / P-value: 0.021000 Search similar-shape structures of this assembly by Omokage search (details) |
Model #1546 | Type: atomic / Radius of dummy atoms: 1.90 A / Symmetry: P1 Comment: MSE converted to MET; N/C-termini modelled with MODELLER Chi-square value: 1.048576 / P-value: 0.002000 Search similar-shape structures of this assembly by Omokage search (details) |
Model #1547 | Type: atomic / Radius of dummy atoms: 1.90 A / Symmetry: P1 Comment: MSE converted to MET; N/C-termini modelled with MODELLER Chi-square value: 1.048576 / P-value: 0.002000 Search similar-shape structures of this assembly by Omokage search (details) |
Model #1548 | Type: atomic / Radius of dummy atoms: 1.90 A / Symmetry: P1 Comment: MSE converted to MET; N/C-termini modelled with MODELLER Chi-square value: 1.07536181603 / P-value: 0.001000 Search similar-shape structures of this assembly by Omokage search (details) |
Model #1549 | Type: atomic / Radius of dummy atoms: 1.90 A / Symmetry: P1 Comment: MSE converted to MET; N/C-termini modelled with MODELLER Chi-square value: 1.07536181603 / P-value: 0.001000 Search similar-shape structures of this assembly by Omokage search (details) |
-Sample
Sample | Name: Truncated monomeric Cytohesin-3 (Grp1; amino acids 63-399) Specimen concentration: 3.1 mg/ml |
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Buffer | Name: 20 mM Tris, 150 mM NaCl, 2 mM MgCl2, 0.1% 2-mercaptoethanol, 5% glycerol, 0.001 mM insitol 1,3,4,5-tetrakis phosphate pH: 8 |
Entity #790 | Name: Cyth3 / Type: protein / Description: Cytohesin-3 / Formula weight: 40.355 / Num. of mol.: 1 / Source: Mus musculus / References: UniProt: O08967 Sequence: MGHHHHHHGS TTQRNAQIAM GRKKFNMDPK KGIQFLIEND LLQSSPEDVA QFLYKGEGLN KTVIGDYLGE RDDFNIKVLQ AFVELHEFAD LNLVQALRQF LWSFRLPGEA QKIDRMMEAF ASRYCLCNPG VFQSTDTCYV LSFAIIMLNT SLHNHNVRDK PTAERFITMN ...Sequence: MGHHHHHHGS TTQRNAQIAM GRKKFNMDPK KGIQFLIEND LLQSSPEDVA QFLYKGEGLN KTVIGDYLGE RDDFNIKVLQ AFVELHEFAD LNLVQALRQF LWSFRLPGEA QKIDRMMEAF ASRYCLCNPG VFQSTDTCYV LSFAIIMLNT SLHNHNVRDK PTAERFITMN RGINEGGDLP EELLRNLYES IKNEPFKIPE DDGNDLTYTF FNPDREGWLL KLGGRVKTWK RRWFILTDNC LYYFEYTTDK EPRGIIPLEN LSIREVEDPR KPNCFELYNP SHKGQVIKAC KTEADGRVVE GNHVVYRISA PSPEEKEEWM KSIKASISRD PFYDMLATRK RRIANKK |
-Experimental information
Beam | Instrument name: Advanced Photon Source (APS) BioCAT 18ID / City: Argonne, IL / 国: USA / Type of source: X-ray synchrotronSynchrotron / Wavelength: 0.10332 Å / Dist. spec. to detc.: 2.5 mm | ||||||||||||||||||||||||||||||||||||
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Detector | Name: MAR 165 CCD | ||||||||||||||||||||||||||||||||||||
Scan | Title: Truncated monomeric Cytohesin-3 (Grp1; amino acids 63-399) Measurement date: Nov 13, 2013 / Cell temperature: 20 °C / Exposure time: 1 sec. / Number of frames: 1 / Unit: 1/A /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 77 /
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Result | Type of curve: other /
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