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- SASDAL2: Ovalbumin in PBS (Ovalbumin) -

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ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDAL2
SampleOvalbumin in PBS
  • Ovalbumin (protein), Gallus gallus
Function / homology
Function and homology information


intracellular amino acid homeostasis / RUNX1 regulates transcription of genes involved in differentiation of keratinocytes / phagolysosome / monoatomic ion homeostasis / response to steroid hormone / embryo development ending in birth or egg hatching / response to corticosterone / monoatomic ion transport / phagocytic vesicle / response to progesterone ...intracellular amino acid homeostasis / RUNX1 regulates transcription of genes involved in differentiation of keratinocytes / phagolysosome / monoatomic ion homeostasis / response to steroid hormone / embryo development ending in birth or egg hatching / response to corticosterone / monoatomic ion transport / phagocytic vesicle / response to progesterone / early endosome lumen / Neutrophil degranulation / response to estrogen / vesicle / protease binding / intracellular membrane-bounded organelle / calcium ion binding / endoplasmic reticulum / extracellular space / extracellular region / cytosol
Similarity search - Function
Serpin, conserved site / Serpins signature. / Serpin superfamily, domain 2 / Serpin family / Serpin domain / Serpin superfamily / Serpin superfamily, domain 1 / Serpin (serine protease inhibitor) / SERine Proteinase INhibitors
Similarity search - Domain/homology
Biological speciesGallus gallus (chicken)
Contact author
  • Darja Ruskule (EMBL-Hamburg, European Molecular Biology Laboratory (EMBL) - Hamburg outstation, Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #21
Type: dummy / Software: DAMMIN / Symmetry: P1 / Chi-square value: 1.565001
Search similar-shape structures of this assembly by Omokage search (details)
Model #209
Type: atomic / Software: CRYSOL (v2.8.3) / Chi-square value: 4.133089
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Ovalbumin in PBS / Ext coefficient: 7.41 / Sample MW: 86 kDa / Specimen concentration: 24.2 mg/ml / Concentration method: nanodrop
BufferName: PBS / PK: 7 / pH: 7.4
Entity #16Type: protein / Description: Ovalbumin / Formula weight: 42.88 / Num. of mol.: 2 / Source: Gallus gallus / References: UniProt: P01012
Sequence: MGSIGAASME FCFDVFKELK VHHANENIFY CPIAIMSALA MVYLGAKDST RTQINKVVRF DKLPGFGDSI EAQCGTSVNV HSSLRDILNQ ITKPNDVYSF SLASRLYAEE RYPILPEYLQ CVKELYRGGL EPINFQTAAD QARELINSWV ESQTNGIIRN VLQPSSVDSQ ...Sequence:
MGSIGAASME FCFDVFKELK VHHANENIFY CPIAIMSALA MVYLGAKDST RTQINKVVRF DKLPGFGDSI EAQCGTSVNV HSSLRDILNQ ITKPNDVYSF SLASRLYAEE RYPILPEYLQ CVKELYRGGL EPINFQTAAD QARELINSWV ESQTNGIIRN VLQPSSVDSQ TAMVLVNAIV FKGLWEKAFK DEDTQAMPFR VTEQESKPVQ MMYQIGLFRV ASMASEKMKI LELPFASGTM SMLVLLPDEV SGLEQLESII NFEKLTEWTS SNVMEERKIK VYLPRMKMEE KYNLTSVLMA MGITDVFSSS ANLSGISSAE SLKISQAVHA AHAEINEAGR EVVGSAEAGV DAASVSEEFR ADHPFLFCIK HIATNAVLFF GRCVSP

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Experimental information

BeamInstrument name: DORIS III X33 / City: Hamburg / 国: Germany / Shape: 0.6 / Type of source: X-ray synchrotronSynchrotron / Wavelength: 0.15 Å / Dist. spec. to detc.: 2.7 mm
DetectorName: Pilatus 1M-W / Pixsize x: 0.172 mm
Scan
Measurement date: Sep 18, 2012 / Storage temperature: 10 °C / Cell temperature: 10 °C / Exposure time: 15 sec. / Number of frames: 8 / Unit: 1/nm /
MinMax
Q0.0871 6.0145
Distance distribution function P(R)
Sofotware P(R): GNOM 4.6 / Number of points: 356 /
MinMax
Q0.3113 3.223
P(R) point82 437
R0 7.3
Result
Type of curve: single_conc / Standard: BSA /
ExperimentalStandardPorod
MW36 kDa36 kDa-
Volume--74.4 nm3

P(R)Guinier
Forward scattering, I036.1 37
Radius of gyration, Rg2.37 nm2.5 nm

MinMax
D-7.8
Guinier point82 151

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