SASDA48: transglutaminase2:anti-transglutaminase2 FAB1 antibody complex

Basic information

• Entry: Database: SASBDB / ID: SASDA48

Sample

transglutaminase2:anti-transglutaminase2 FAB1 antibody complex

• anti-TG2 antibody (679 14 E06) (protein)
• transglutaminase 2 (protein), TGA, Homo sapiens

• Biological species: Homo sapiens (human)
• Citation: Journal: J Biol Chem / Year: 2015; Title: Structural Basis for Antigen Recognition by Transglutaminase 2-specific Autoantibodies in Celiac Disease.; Authors: Xi Chen / Kathrin Hnida / Melissa Ann Graewert / Jan Terje Andersen / Rasmus Iversen / Anne Tuukkanen / Dmitri Svergun / Ludvig M Sollid / ; Abstract: Antibodies to the autoantigen transglutaminase 2 (TG2) are a hallmark of celiac disease. We have studied the interaction between TG2 and an anti-TG2 antibody (679-14-E06) derived from a single gut IgA plasma cell of a celiac disease patient. The antibody recognizes one of four identified epitopes targeted by antibodies of plasma cells of the disease lesion. The binding interface was identified by small angle x-ray scattering, ab initio and rigid body modeling using the known crystal structure of TG2 and the crystal structure of the antibody Fab fragment, which was solved at 2.4 Å resolution. The result was confirmed by testing binding of the antibody to TG2 mutants by ELISA and surface plasmon resonance. TG2 residues Arg-116 and His-134 were identified to be critical for binding of 679-14-E06 as well as other epitope 1 antibodies. In contrast, antibodies directed toward the two other main epitopes (epitopes 2 and 3) were not affected by these mutations. Molecular dynamics simulations suggest interactions of 679-14-E06 with the N-terminal domain of TG2 via the CDR2 and CDR3 loops of the heavy chain and the CDR2 loop of the light chain. In addition there were contacts of the framework 3 region of the heavy chain with the catalytic domain of TG2. The results provide an explanation for the biased usage of certain heavy and light chain gene segments by epitope 1-specific antibodies in celiac disease.

Contact author

• Melissa Graewert (EMBL-Hamburg, European Molecular Biology Laboratory (EMBL) - Hamburg outstation, Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany)

Models

• Model #308: ; Type: dummy / Software: DAMMIN / Radius of dummy atoms: 3.50 A / Chi-square value: 0.724201 / P-value: 0.157000; Search similar-shape structures of this assembly by Omokage search (details)
• Model #309: ; Type: atomic / Software: SASREF / Radius of dummy atoms: 1.90 A / Chi-square value: 0.66 / P-value: 0.053000; Search similar-shape structures of this assembly by Omokage search (details)

Sample

• Sample: Name: transglutaminase2:anti-transglutaminase2 FAB1 antibody complex; Specimen concentration: 9 mg/ml / Entity id: 175 / 176
• Buffer: Name: 20 mM Tris 150mM NaCl 1mM EDTA / Concentration: 20.00 mM / pH: 7.2 / Composition: 150mM NaCl, 1mM EDTA

Entity #175

Type: protein / Description: anti-TG2 antibody (679 14 E06) / Formula weight: 47.639 / Num. of mol.: 1
Sequence:

EVQLVQSGAE VKKPGESLKI SCKGSGYSFT SYWIGWVRQM PGKGLEWMGI IYPGDSDTRY SPSFQGQVTI SADKSISTAY LQWSSLKASD TAMYYCARPH YYDSLDAFDI WGQGTMVTVS SASTKGPSVF PLAPSSKSTS GGTAALGCLV KDYFPEPVTV SWNSGALTSG VHTFPAVLQS SGLYSLSSVV TVPSSSLGTQ TYICNVNHKP SNTKVDKRVE PKSCDIQMTQ SPSTLSASVG DRVTITCRAS QSISSWLAWY QQRPGKAPKL LIYKASSLES GVPSRFSGSG SGTEFTLTIS SLQPDDFATY YCQHYNSYSP GYTFGQGTKV EIKRTVAAPS VFIFPPSDEQ LKSGTASVVC LLNNFYPREA KVQWKVDNAL QSGNSQESVT EQDSKDSTYS LSSTLTLSKA DYEKHKVYAC EVTHQGLSSP VTKSFNRGEC

Entity #176

Name: TGA / Type: protein / Description: transglutaminase 2 / Formula weight: 79.491 / Num. of mol.: 1 / Source: Homo sapiens
Sequence:

MGSSHHHHHH SSGLVPRGSH maeelvlerc dleletngrd hhtadlcrek lvvrrgqpfw ltlhfegrny easvdsltfs vvtgpapsqe agtkarfplr daveegdwta tvvdqqdctl slqlttpana piglyrlsle astgyqgssf vlghfillfn awcpadavyl dseeerqeyv ltqqgfiyqg sakfiknipw nfgqfedgil diclilldvn pkflknagrd csrrsspvyv grvvsgmvnc nddqgvllgr wdnnygdgvs pmswigsvdi lrrwknhgcq rvkygqcwvf aavactvlrc lgiptrvvtn ynsahdqnsn llieyfrnef geiqgdksem iwnfhcwves wmtrpdlqpg yegwqaldpt pqeksegtyc cgpvpvraik egdlstkyda pfvfaevnad vvdwiqqddg svhksinrsl ivglkistks vgrderedit htykypegss eereaftran hlnklaekee tgmamrirvg qsmnmgsdfd vfahitnnta eeyvcrlllc artvsyngil gpecgtkyll nlnlepfsek svplcilyek yrdcltesnl ikvrallvep vinsyllaer dlylenpeik irilgepkqk rklvaevslq nplpvalegc tftvegaglt eeqktveipd pveageevkv rmdllplhmg lhklvvnfes dklkavkgfr nviigpa

Experimental information

• Beam: Instrument name: PETRA III P12 / City: Hamburg / 国: Germany / Type of source: X-ray synchrotronSynchrotron / Wavelength: 0.12 Å / Dist. spec. to detc.: 3.1 mm
• Detector: Name: Pilatus 2M

Scan

Title: Complex: TG2 bound to anti-TG2 FAB1 antibody / Measurement date: Jan 17, 2015 / Storage temperature: 10 °C / Cell temperature: 10 °C / Exposure time: 0.05 sec. / Number of frames: 20 / Unit: 1/nm /

	Min	Max
Q	0.1438	2.5071

Distance distribution function P(R)

Sofotware P(R): GNOM 5.0 / Number of points: 720 /

	Min	Max
Q	0.1438	2.0381
P(R) point	1	720
R	0	13.87

Result

Type of curve: single_conc
Comments: Structural basis for antigen recognition by transglutaminase 2-specific autoantibodies in celiac disease. SAXS profile of the complex formed between transglutaminase2 bound to anti-transglutaminase2 antibody (679 14 E06) FAB1.

	Experimental	Standard	Porod
MW	110 kDa	110 kDa	105 kDa
Volume	-	-	167.7 nm3

	P(R)	P(R) error	Guinier	Guinier error
Forward scattering, I0	21920	50.7	21843	54.8
Radius of gyration, Rg	4.03 nm	0.01	3.96 nm	0.02

	Min	Max	Error
D	-	13.9	0.5
Guinier point	1	64	-