[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 7,884 items for (author: shi & y)

EMDB-60143:
Cryo-EM structure of human integrin alpha-E beta-7
Method: single particle / : Akasaka H, Nureki O, Kise Y

PDB-8zjf:
Cryo-EM structure of human integrin alpha-E beta-7
Method: single particle / : Akasaka H, Nureki O, Kise Y

EMDB-42970:
Model and map from local refinement of a CAB-A17 - Omicron Ba.1 spike complex
Method: single particle / : Hallberg BM, Das H

PDB-8v4f:
Model and map from local refinement of a CAB-A17 - Omicron Ba.1 spike complex
Method: single particle / : Hallberg BM, Das H

EMDB-39582:
Cryo-EM structure of the amthamine-bound H2R-Gs complex
Method: single particle / : Shen Q, Tang X, Wen X, Cheng S, Xiao P, Zang S, Shen D, Jiang L, Zheng Y, Zhang H, Xu H, Mao C, Zhang M, Hu W, Sun J, Chen Z, Zhang Y

EMDB-39583:
Cryo-EM structure of the histamine-bound H3R-Gi complex
Method: single particle / : Shen Q, Tang X, Wen X, Cheng S, Xiao P, Zang S, Shen D, Jiang L, Zheng Y, Zhang H, Xu H, Mao C, Zhang M, Hu W, Sun J, Chen Z, Zhang Y

EMDB-39584:
Cryo-EM structure of the immepip-bound H3R-Gi complex
Method: single particle / : Shen Q, Tang X, Wen X, Cheng S, Xiao P, Zang S, Shen D, Jiang L, Zheng Y, Zhang H, Xu H, Mao C, Zhang M, Hu W, Sun J, Chen Z, Zhang Y

PDB-8yut:
Cryo-EM structure of the amthamine-bound H2R-Gs complex
Method: single particle / : Shen Q, Tang X, Wen X, Cheng S, Xiao P, Zang S, Shen D, Jiang L, Zheng Y, Zhang H, Xu H, Mao C, Zhang M, Hu W, Sun J, Chen Z, Zhang Y

PDB-8yuu:
Cryo-EM structure of the histamine-bound H3R-Gi complex
Method: single particle / : Shen Q, Tang X, Wen X, Cheng S, Xiao P, Zang S, Shen D, Jiang L, Zheng Y, Zhang H, Xu H, Mao C, Zhang M, Hu W, Sun J, Chen Z, Zhang Y

PDB-8yuv:
Cryo-EM structure of the immepip-bound H3R-Gi complex
Method: single particle / : Shen Q, Tang X, Wen X, Cheng S, Xiao P, Zang S, Shen D, Jiang L, Zheng Y, Zhang H, Xu H, Mao C, Zhang M, Hu W, Sun J, Chen Z, Zhang Y

EMDB-37858:
SpCas9-MMLV RT-pegRNA-target DNA complex (termination)
Method: single particle / : Yutaro S, Ryoya N, Mizuki H, Satoshi NO, Hisato H, Yuzuru I, Osamu N

EMDB-37859:
SpCas9-MMLV RT-pegRNA-target DNA complex (initiation)
Method: single particle / : Yutaro S, Ryoya N, Mizuki H, Satoshi NO, Hisato H, Yuzuru I, Osamu N

EMDB-37860:
SpCas9-pegRNA-target DNA complex (pre-initiation)
Method: single particle / : Yutaro S, Ryoya N, Mizuki H, Satoshi NO, Hisato H, Yuzuru I, Osamu N

EMDB-37861:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 16-nt)
Method: single particle / : Yutaro S, Ryoya N, Mizuki H, Satoshi NO, Hisato H, Yuzuru I, Osamu N

EMDB-39253:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 28-nt)
Method: single particle / : Yutaro S, Ryoya N, Mizuki H, Satoshi NO, Hisato H, Yuzuru I, Osamu N

PDB-8wus:
SpCas9-MMLV RT-pegRNA-target DNA complex (termination)
Method: single particle / : Yutaro S, Ryoya N, Mizuki H, Satoshi NO, Hisato H, Yuzuru I, Osamu N

PDB-8wut:
SpCas9-MMLV RT-pegRNA-target DNA complex (initiation)
Method: single particle / : Yutaro S, Ryoya N, Mizuki H, Satoshi NO, Hisato H, Yuzuru I, Osamu N

PDB-8wuu:
SpCas9-pegRNA-target DNA complex (pre-initiation)
Method: single particle / : Yutaro S, Ryoya N, Mizuki H, Satoshi NO, Hisato H, Yuzuru I, Osamu N

PDB-8wuv:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 16-nt)
Method: single particle / : Yutaro S, Ryoya N, Mizuki H, Satoshi NO, Hisato H, Yuzuru I, Nureki O

PDB-8ygj:
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 28-nt)
Method: single particle / : Yutaro S, Ryoya N, Mizuki H, Satoshi NO, Hisato H, Yuzuru I, Osamu N

EMDB-19926:
CTE type I tau filament from vacuolar tauopathy
Method: helical / : Qi C, Scheres HWS, Goedert M

EMDB-19927:
CTE type II tau filament from vacuolar tauopathy
Method: helical / : Qi C, Scheres HWS, Goedert M

EMDB-19928:
CTE type II tau filament from vacuolar tauopathy
Method: helical / : Qi C, Scheres HWS, Goedert M

PDB-9erm:
CTE type I tau filament from vacuolar tauopathy
Method: helical / : Qi C, Scheres HWS, Goedert M

PDB-9ern:
CTE type II tau filament from vacuolar tauopathy
Method: helical / : Qi C, Scheres HWS, Goedert M

PDB-9ero:
CTE type II tau filament from vacuolar tauopathy
Method: helical / : Qi C, Scheres HWS, Goedert M

EMDB-36271:
Cryo-EM structure of the DOCK5/ELMO1 complex, focused on one protomer
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

PDB-8jhk:
Cryo-EM structure of the DOCK5/ELMO1 complex, focused on one protomer
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Mishima-Tsumagari C, Yonemochi M, Inoue M, Nakagawa R, Kaushik R, Zhang KYJ, Shirouzu M

EMDB-38059:
Cryo-EM structure of human gamma-secretase in complex with Abeta49
Method: single particle / : Guo X, Yan C, Lei J, Zhou R, Shi Y, Jia B, Jing D

EMDB-38060:
Cryo-EM structure of human gamma-secretase in complex with Abeta46
Method: single particle / : Guo X, Yan C, Lei J, Zhou R, Shi Y, Jia B, Jing D

EMDB-38061:
Cryo-EM structure of human gamma-secretase in complex with APP-C99
Method: single particle / : Guo X, Yan C, Lei J, Zhou R, Shi Y, Jia B, Jing D

EMDB-39574:
Cryo-EM structure of human gamma-secretase in complex with Abeta43
Method: single particle / : Guo X, Zhou R, Shi Y

PDB-8x52:
Cryo-EM structure of human gamma-secretase in complex with Abeta49
Method: single particle / : Guo X, Yan C, Lei J, Zhou R, Shi Y

PDB-8x53:
Cryo-EM structure of human gamma-secretase in complex with Abeta46
Method: single particle / : Guo X, Yan C, Lei J, Zhou R, Shi Y

PDB-8x54:
Cryo-EM structure of human gamma-secretase in complex with APP-C99
Method: single particle / : Guo X, Yan C, Lei J, Zhou R, Shi Y

EMDB-17680:
Cryo EM structure of the type 3B polymorph of alpha-synuclein at low pH.
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

EMDB-17693:
Cryo EM structure of the type 3C polymorph of alpha-synuclein at low pH.
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

EMDB-17714:
Cryo EM structure of the type 3D polymorph of alpha-synuclein E46K mutant at low pH.
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

EMDB-17723:
Cryo EM structure of the type 1m polymorph of alpha-synuclein
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

EMDB-17726:
Cryo EM structure of the type 5A polymorph of alpha-synuclein.
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

EMDB-50076:
Cryo EM map of the type 2A polymorph of alpha-synuclein at pH 7.0.
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

EMDB-50077:
Cryo EM map of the type 2B polymorph of alpha-synuclein at pH 7.0.
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

PDB-8pic:
Cryo EM structure of the type 3B polymorph of alpha-synuclein at low pH.
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

PDB-8pix:
Cryo EM structure of the type 3C polymorph of alpha-synuclein at low pH.
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

PDB-8pjo:
Cryo EM structure of the type 3D polymorph of alpha-synuclein E46K mutant at low pH.
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

PDB-8pk2:
Cryo EM structure of the type 1m polymorph of alpha-synuclein
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

PDB-8pk4:
Cryo EM structure of the type 5A polymorph of alpha-synuclein.
Method: helical / : Frey L, Qureshi BM, Kwiatkowski W, Rhyner D, Greenwald J, Riek R

EMDB-40436:
48-nm doublet microtubule from Tetrahymena thermophila strain MEC17
Method: single particle / : Black CS, Kubo S, Yang SK, Bui KH

PDB-8sf7:
48-nm doublet microtubule from Tetrahymena thermophila strain MEC17
Method: single particle / : Black CS, Kubo S, Yang SK, Bui KH

EMDB-36920:
Cryo-EM Structure of Membrane-bound Fructose Dehydrogenase from Gluconobacter japonicus variant-H1147A
Method: single particle / : Fukawa E, Miyata T, Makino F, Adachi T, Suzuki Y, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more