[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 124 items for (author: ehara & h)

EMDB-35448:
Overlapping tri-nucleosome
Method: single particle / : Nishimura M, Fujii T, Tanaka H, Maehara K, Nozawa K, Takizawa Y, Ohkawa Y, Kurumizaka H

PDB-8ihl:
Overlapping tri-nucleosome
Method: single particle / : Nishimura M, Fujii T, Tanaka H, Maehara K, Nozawa K, Takizawa Y, Ohkawa Y, Kurumizaka H

EMDB-34022:
Cryo-EM structure of human topoisomerase II beta in complex with DNA and etoposide
Method: single particle / : Naganuma M, Ehara H, Kim D, Nakagawa R, Cong A, Bu H, Jeong J, Jang J, Schellenberg MJ, Bunch H, Sekine S

PDB-7yq8:
Cryo-EM structure of human topoisomerase II beta in complex with DNA and etoposide
Method: single particle / : Naganuma M, Ehara H, Kim D, Nakagawa R, Cong A, Bu H, Jeong J, Jang J, Schellenberg MJ, Bunch H, Sekine S

EMDB-36251:
RNA polymerase II elongation complex bound with Elf1, Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

EMDB-36252:
RNA polymerase II elongation complex containing 40 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

EMDB-36253:
RNA polymerase II elongation complex containing 60 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

EMDB-37848:
RNA polymerase II elongation complex bound with Elf1, Spt4/5 and foreign DNA, stalled at SHL(0) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

PDB-8jh2:
RNA polymerase II elongation complex bound with Elf1, Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

PDB-8jh3:
RNA polymerase II elongation complex containing 40 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

PDB-8jh4:
RNA polymerase II elongation complex containing 60 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

EMDB-37070:
Cryo-EM structure of the human nucleosome containing H3.8
Method: single particle / : Hirai H, Kujirai T, Takizawa Y, Kurumizaka H

PDB-8kb5:
Cryo-EM structure of the human nucleosome containing H3.8
Method: single particle / : Hirai H, Kujirai T, Takizawa Y, Kurumizaka H

EMDB-36389:
Cryo-EM structure of the human nucleosome with scFv
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

EMDB-36390:
Cryo-EM structure of the human nucleosome lacking N-terminal region of H2A, H2B, H3, and H4
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

EMDB-36391:
Cryo-EM structure of the 145 bp human nucleosome containing H3.2 C110A mutant
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

EMDB-36393:
Cryo-EM structure of the 145 bp human nucleosome containing acetylated H3 tail
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

PDB-8jl9:
Cryo-EM structure of the human nucleosome with scFv
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

PDB-8jla:
Cryo-EM structure of the human nucleosome lacking N-terminal region of H2A, H2B, H3, and H4
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

PDB-8jlb:
Cryo-EM structure of the 145 bp human nucleosome containing H3.2 C110A mutant
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

PDB-8jld:
Cryo-EM structure of the 145 bp human nucleosome containing acetylated H3 tail
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

EMDB-36744:
Thermus thermophilus Rho-engaged RNAP elongation complex; EC part
Method: single particle / : Murayama Y, Ehara H, Sekine S

EMDB-36745:
Thermus thermophilus Rho-engaged RNAP elongation complex; Rho part
Method: single particle / : Murayama Y, Ehara H, Sekine S

EMDB-34400:
Cryo-EM structure of the NS5-SLA complex
Method: single particle / : Osawa T, Ehara H, Sekine S

EMDB-34401:
Cryo-EM structure of the NS5-NS3-SLA complex
Method: single particle / : Osawa T, Ehara H, Sekine S

EMDB-34402:
Cryo-EM structure of the the NS5-NS3 RNA-elongation complex
Method: single particle / : Osawa T, Ehara H, Sekine S

PDB-8gzp:
Cryo-EM structure of the NS5-SLA complex
Method: single particle / : Osawa T, Ehara H, Sekine S

PDB-8gzq:
Cryo-EM structure of the NS5-NS3-SLA complex
Method: single particle / : Osawa T, Ehara H, Sekine S

PDB-8gzr:
Cryo-EM structure of the the NS5-NS3 RNA-elongation complex
Method: single particle / : Osawa T, Ehara H, Sekine S

EMDB-32407:
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-4) of the nucleosome
Method: single particle / : Osumi K, Kujirai T, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-32408:
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3.5) of the nucleosome
Method: single particle / : Osumi K, Kujirai T, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-32409:
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3) of the nucleosome
Method: single particle / : Osumi K, Kujirai T, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-34685:
RNA polymerase II elongation complex bound with Rad26 and Elf1, stalled at SHL(-3.5) of the nucleosome
Method: single particle / : Osumi K, Kujirai T, Ehara H, Kinoshita C, Saotome M, Kagawa W, Sekine S, Takizawa Y, Kurumizaka H

PDB-7wbv:
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-4) of the nucleosome
Method: single particle / : Osumi K, Kujirai T, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-7wbw:
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3.5) of the nucleosome
Method: single particle / : Osumi K, Kujirai T, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-7wbx:
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3) of the nucleosome
Method: single particle / : Osumi K, Kujirai T, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-8he5:
RNA polymerase II elongation complex bound with Rad26 and Elf1, stalled at SHL(-3.5) of the nucleosome
Method: single particle / : Osumi K, Kujirai T, Ehara H, Kinoshita C, Saotome M, Kagawa W, Sekine S, Takizawa Y, Kurumizaka H

EMDB-34588:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 1 (3.2 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

EMDB-34589:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 2 (3.9 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

EMDB-34590:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 4 (3.9 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Shirouzu M, Umehara T

EMDB-34591:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 1 (4.7 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

EMDB-34592:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 2 (4.8 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

EMDB-34593:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 3
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Shirouzu M, Umehara T

EMDB-34594:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 4 (4.5 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

EMDB-34595:
Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 1
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

EMDB-34596:
Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 2
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

EMDB-34597:
Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 3
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

PDB-8hag:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 1 (3.2 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

PDB-8hah:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 2 (3.9 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

PDB-8hai:
Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 1 (4.7 angstrom resolution)
Method: single particle / : Kikuchi M, Morita S, Wakamori M, Shin S, Uchikubo-Kamo T, Shirouzu M, Umehara T

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more