[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 644 items for (database: EMDB) & (Data entries: Updated only)

EMDB-40940:
TRPV1 in Nanodisc bound with lysophosphatidic acid in all four monomers
Method: single particle / : Arnold WR, Cheng Y

EMDB-40941:
TRPV1 in Nanodisc not bound with lysophosphatidic acid (apo)
Method: single particle / : Arnold WR, Cheng Y

EMDB-40949:
TRPV1 in nanodisc bound with one LPA in one monomer
Method: single particle / : Arnold WR, Cheng Y

EMDB-40951:
TRPV1 in nanodisc bound with two LPA molecules in opposite monomers
Method: single particle / : Arnold WR, Julius D, Cheng Y

EMDB-41005:
TRPV1 in nanodisc bound with 2 LPA molecules in neighboring monomers
Method: single particle / : Arnold WR, Julius D, Cheng Y

EMDB-41006:
TRPV1 in nanodisc bound with 3 LPA molecules
Method: single particle / : Arnold WR, Julius D, Cheng Y

EMDB-41847:
TRPV1 in nanodisc bound with diC8-PIP2 in the dilated state
Method: single particle / : Arnold WR, Julius D, Cheng Y

EMDB-41848:
TRPV1 in nanodisc bound with diC8-PIP2 in the closed state
Method: single particle / : Arnold WR, Julius D, Cheng Y

EMDB-41855:
TRPV1 in nanodisc bound with PI-Br4 bound in Conformation 1 (monomer)
Method: single particle / : Arnold WR, Julius D, Cheng Y

EMDB-41857:
TRPV1 in nanodisc bound with PI-Br4 bound in Conformation 2 (monomer)
Method: single particle / : Arnold WR, Julius D, Cheng Y

EMDB-41864:
TRPV1 in nanodisc bound with empty vanilloid binding pocket at 4C
Method: single particle / : Arnold WR, Julius D, Cheng Y

EMDB-41866:
TRPV1 in nanodisc bound with empty vanilloid binding pocket at 25C
Method: single particle / : Arnold WR, Julius D, Cheng Y

EMDB-41873:
TRPV1 in nanodisc bound with PIP2-Br4
Method: single particle / : Arnold WR, Julius D, Cheng Y

EMDB-41879:
TRPV1 in nanodisc bound with PI-Br4, consensus structure
Method: single particle / : Arnold WR, Julius D, Cheng Y

EMDB-17213:
Human Mitochondrial Lon Y186F Mutant ADP Bound
Method: single particle / : Kereiche S, Bauer JA, Matyas P, Novacek J, Kutejova E

EMDB-17214:
Human Mitochondrial Lon Y186E Mutant ADP Bound
Method: single particle / : Kereiche S, Bauer JA, Matyas P, Novacek J, Kutejova E

EMDB-43488:
Cryo-EM structure of human invariant chain in complex with HLA-DR15
Method: single particle / : Wang N, Caveney NA, Jude KM, Garcia KC

EMDB-43501:
Cryo-EM structure of human invariant chain in complex with HLA-DQ
Method: single particle / : Wang N, Caveney NA, Jude KM, Garcia KC

EMDB-42383:
Cryo-EM map of the human CTF18-RFC-PCNA binary complex in the three-subunit binding state (state 2)
Method: single particle / : Wang F, He Q, Li H

EMDB-42384:
Cryo-EM map of the human CTF18-RFC-PCNA binary complex in the four-subunit binding state (state 3)
Method: single particle / : Wang F, He Q, Li H

EMDB-42385:
Cryo-EM map of the human CTF18-RFC-PCNA-DNA ternary complex with narrow PCNA opening state I (state 5)
Method: single particle / : Wang F, He Q, Li H

EMDB-42386:
Cryo-EM map of the human CTF18-RFC-PCNA-DNA ternary complex in the five-subunit binding state (state 4)
Method: single particle / : Wang F, He Q, Li H

EMDB-42388:
Cryo-EM map of the human CTF18-RFC-PCNA-DNA ternary complex with narrow PCNA opening state II (state 6)
Method: single particle / : Wang F, He Q, Li H

EMDB-42389:
Cryo-EM map of the human CTF18-RFC-PCNA-DNA ternary complex with cracked and closed PCNA (state 7)
Method: single particle / : Wang F, He Q, Li H

EMDB-42406:
Cryo-EM map of the human CTF18-RFC alone in the apo state (State 1)
Method: single particle / : Wang F, He Q, Li H

EMDB-17216:
CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME : PARENTAL STRAIN
Method: single particle / : Rajan KS, Yonath A

EMDB-43683:
Cryo-EM structure of FLVCR2 in the inward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

EMDB-43684:
Cryo-EM structure of FLVCR2 in the outward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

EMDB-40681:
SpRY-Cas9:gRNA complex targeting TGG PAM DNA
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-40705:
SpRY-Cas9:gRNA complex targeting TTC PAM DNA
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-40740:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41073:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 0 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41074:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 2 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41079:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 10 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41080:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 13 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41083:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 18 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41084:
SpRY-Cas9:gRNA complex bound to non-target DNA with 1 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41085:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 3 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41086:
SpRY-Cas9:gRNA complex bound to non-target DNA with 6 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41087:
SpRY-Cas9:gRNA complex bound to non-target DNA with 8 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41093:
SpRYmer bound to NAC PAM DNA
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41775:
SpG Cas9 with NGC PAM DNA target
Method: single particle / : Bravo JPK, Hibshman GN, Taylor DW

EMDB-41867:
SpG Cas9 with NGG PAM DNA target
Method: single particle / : Bravo JPK, Hibshman GN, Taylor DW

EMDB-17189:
Structure of the human neutral amino acid transporter ASCT2 in complex with nanobody 469
Method: single particle / : Canul-Tec J, Reyes N

EMDB-17192:
Complex of human ASCT2 with Syncytin-1
Method: single particle / : Khare S, Reyes N

EMDB-17193:
Complex of ASCT2 with Suppressyn
Method: single particle / : Khare S, Kumar A, Reyes N

EMDB-17194:
Heterotrimeric Complex of Human ASCT2 with Syncytin-1
Method: single particle / : Khare S, Reyes N

EMDB-18879:
Roco protein from C. tepidum in the GTP state bound to an activating Nanobody
Method: single particle / : Galicia C, Fislage M, Versees W

EMDB-18882:
Roco protein from C. tepidum in the GTP state bound to the activating Nanobodies NbRoco1 and NbRoco2
Method: single particle / : Galicia C, Fislage M, Versees W

EMDB-18885:
Focused map on the LRR domain of the Roco protein from C. tepidum bound to the activating Nanobody NbRoco2
Method: single particle / : Galicia C, Versees W

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more