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PDBj (Protein Data Bank Japan) maintains a centralized PDB archive of macromolecular structures and provides integrated tools, in collaboration with the RCSB, the BMRB in USA and the PDBe in EU. PDBj is supported by JST-NBDC and Osaka University.

Molecule of the Month

These sites provide Japanese translations of Molecule of the Month, produced by Dr. David S. Goodsell of RCSB. They include functional and structural explanations of molecules selected from Protein Data Bank (PDB) which is a popular topic among people.
  • ja:Translated Japanese page in PDBj
  • en:Original English page in RCSB
Entry List:
A
AAA+ Proteases
  • 080 [ja|en] :2006/08:AAA+ Proteases
  • 156 [ja|en] :2012/12:ABO Blood Type Glycosyltransferases
  • 071 [ja|en] :2005/11:Acetylcholine Receptor
  • 054 [ja|en] :2004/06:Acetylcholinesterase
  • 089 [ja|en] :2007/05:Aconitase and Iron Regulatory Protein 1
  • 019 [ja|en] :2001/07:Actin
  • 160 [ja|en] :2013/04:Actinomycin
  • 132 [ja|en] :2010/12:Adenovirus
  • 100 [ja|en] :2008/04:Adrenergic Receptors
  • 013 [ja|en] :2001/01:Alcohol Dehydrogenase
  • 074 [ja|en] :2006/02:alpha-Amylase
  • 016 [ja|en] :2001/04:Aminoacyl-tRNA Synthetases
  • 146 [ja|en] :2012/02:Aminoglycoside Antibiotics
  • 079 [ja|en] :2006/07:Amyloid-beta Precursor Protein
  • 092 [ja|en] :2007/08:Anabolic Steroids
  • 028 [ja|en] :2002/04:Anthrax Toxin
  • 021 [ja|en] :2001/09:Antibodies
  • 120 [ja|en] :2009/12:Antifreeze Proteins
  • 072 [ja|en] :2005/12:ATP Synthase
  • 110 [ja|en] :2009/02:Auxin and TIR1 Ubiquitin Ligase
B
Bacteriophage phiX174
  • 002 [ja|en] :2000/02:Bacteriophage phiX174
  • 027 [ja|en] :2002/03:Bacteriorhodopsin
  • 115 [ja|en] :2009/07:beta-Secretase
C
Cadherin
  • 099 [ja|en] :2008/03:Cadherin
  • 051 [ja|en] :2004/03:Calcium Pump
  • 044 [ja|en] :2003/08:Calmodulin
  • 152 [ja|en] :2012/08:cAMP-dependent Protein Kinase
  • 049 [ja|en] :2004/01:Carbonic Anhydrase
  • 066 [ja|en] :2005/06:Carotenoid Oxygenase
  • 056 [ja|en] :2004/08:Caspases
  • 048 [ja|en] :2003/12:Catabolite Activator Protein
  • 057 [ja|en] :2004/09:Catalase
  • 032 [ja|en] :2002/08:Chaperones
  • 069 [ja|en] :2005/09:Cholera Toxin
  • 097 [ja|en] :2008/01:Circadian Clock Proteins
  • 093 [ja|en] :2007/09:Citrate Synthase
  • 154 [ja|en] :2012/10:Citric Acid Cycle
  • 088 [ja|en] :2007/04:Clathrin
  • 004 [ja|en] :2000/04:Collagen
  • 144 [ja|en] :2011/12:Complex I
  • 124 [ja|en] :2010/04:Concanavalin A and Circular Permutation
  • 127 [ja|en] :2010/07:Crystallins
  • 017 [ja|en] :2001/05:Cyclooxygenase
  • 137 [ja|en] :2011/05:Cytochrome bc1
  • 036 [ja|en] :2002/12:Cytochrome c
  • 005 [ja|en] :2000/05:Cytochrome c Oxidase
  • 082 [ja|en] :2006/10:Cytochrome p450
D
Dengue Virus
  • 103 [ja|en] :2008/07:Dengue Virus
  • 119 [ja|en] :2009/11:Designed DNA Crystal
  • 070 [ja|en] :2005/10:Designer Proteins
  • 034 [ja|en] :2002/10:Dihydrofolate Reductase
  • 023 [ja|en] :2001/11:DNA
  • 055 [ja|en] :2004/07:DNA Ligase
  • 139 [ja|en] :2011/07:DNA Methyltransferase
  • 003 [ja|en] :2000/03:DNA Polymerase
E
Elongation Factors
  • 081 [ja|en] :2006/09:Elongation Factors
  • 122 [ja|en] :2010/02:Enhanceosome
  • 126 [ja|en] :2010/06:Epidermal Growth Factor
  • 159 [ja|en] :2013/03:Erythrocruorin
  • 045 [ja|en] :2003/09:Estrogen Receptor
  • 086 [ja|en] :2007/02:Exosomes
F
Fatty Acid Synthase
  • 090 [ja|en] :2007/06:Fatty Acid Synthase
  • 035 [ja|en] :2002/11:Ferritin and Transferrin
  • 083 [ja|en] :2006/11:Fibrin
G
G Proteins
  • 058 [ja|en] :2004/10:G Proteins
  • 138 [ja|en] :2011/06:Glucansucrase
  • 077 [ja|en] :2006/05:Glucose Oxidase
  • 030 [ja|en] :2002/06:Glutamine Synthetase
  • 024 [ja|en] :2001/12:Glycogen Phosphorylase
  • 050 [ja|en] :2004/02:Glycolytic Enzymes
  • 042 [ja|en] :2003/06:Green Fluorescent Protein
  • 052 [ja|en] :2004/04:Growth Hormone
H
Hemagglutinin
  • 076 [ja|en] :2006/04:Hemagglutinin
  • 041 [ja|en] :2003/05:Hemoglobin
  • 006 [ja|en] :2000/06:HIV-1 Protease
  • 108 [ja|en] :2008/12:Hsp90
  • 111 [ja|en] :2009/03:Hydrogenase
  • 151 [ja|en] :2012/07:Hypoxanthine-guanine phosphoribosyltransferase
I
Importins
  • 085 [ja|en] :2007/01:Importins
  • 113 [ja|en] :2009/05:Influenza Neuraminidase
  • 014 [ja|en] :2001/02:Insulin
  • 135 [ja|en] :2011/03:Integrase
  • 134 [ja|en] :2011/02:Integrin
  • 131 [ja|en] :2010/11:Inteins
  • 128 [ja|en] :2010/08:Interferons
  • 129 [ja|en] :2010/09:Isocitrate Dehydrogenase
K
Kinesin
  • 064 [ja|en] :2005/04:Kinesin
L
lac Repressor
  • 039 [ja|en] :2003/03:lac Repressor
  • 102 [ja|en] :2008/06:Lactate Dehydrogenase
  • 149 [ja|en] :2012/05:Leptin
  • 078 [ja|en] :2006/06:Luciferase
  • 009 [ja|en] :2000/09:Lysozyme
M
Major Histocompatibility Complex
  • 062 [ja|en] :2005/02:Major Histocompatibility Complex
  • 107 [ja|en] :2008/11:Mechanosensitive Channels
  • 145 [ja|en] :2012/01:Messenger RNA Capping
  • 095 [ja|en] :2007/11:Multidrug Resistance Transporters
  • 001 [ja|en] :2000/01:Myoglobin
  • 018 [ja|en] :2001/06:Myosin
N
Nanobodies
  • 136 [ja|en] :2011/04:Nanobodies
  • 068 [ja|en] :2005/08:Neurotrophins
  • 133 [ja|en] :2011/01:Nitric Oxide Synthase
  • 026 [ja|en] :2002/02:Nitrogenase
  • 007 [ja|en] :2000/07:Nucleosome
O
O-GlcNAc Transferase
  • 141 [ja|en] :2011/09:O-GlcNAc Transferase
  • 112 [ja|en] :2009/04:Oct and Sox Transcription Factors
  • 096 [ja|en] :2007/12:Oxidosqualene Cyclase
P
P-glycoprotein
  • 123 [ja|en] :2010/03:P-glycoprotein
  • 031 [ja|en] :2002/07:p53 Tumor Suppressor
  • 125 [ja|en] :2010/05:Parvoviruses
  • 142 [ja|en] :2011/10:PDB Pioneers
  • 029 [ja|en] :2002/05:Penicillin-binding Proteins
  • 012 [ja|en] :2000/12:Pepsin
  • 061 [ja|en] :2005/01:Phenylalanine Hydroxylase
  • 022 [ja|en] :2001/10:Photosystem I
  • 059 [ja|en] :2004/11:Photosystem II
  • 020 [ja|en] :2001/08:Poliovirus and Rhinovirus
  • 106 [ja|en] :2008/10:Poly(A) Polymerase
  • 038 [ja|en] :2003/02:Potassium Channels
  • 101 [ja|en] :2008/05:Prions
  • 158 [ja|en] :2013/02:Proton-Gated Urea Channel
  • 153 [ja|en] :2012/09:Pyruvate Dehydrogenase Complex
R
Ras Protein
  • 148 [ja|en] :2012/04:Ras Protein
  • 008 [ja|en] :2000/08:Restriction Enzymes
  • 033 [ja|en] :2002/09:Reverse Transcriptase
  • 147 [ja|en] :2012/03:Rhodopsin
  • 140 [ja|en] :2011/08:Rhomboid Protease GlpG
  • 105 [ja|en] :2008/09:Ribonuclease A
  • 010 [ja|en] :2000/10:Ribosome
  • 130 [ja|en] :2010/10:Riboswitches
  • 161 [ja|en] :2013/05:Ricin
  • 040 [ja|en] :2003/04:RNA Polymerase
  • 011 [ja|en] :2000/11:Rubisco
S
Selenocysteine Synthase
  • 104 [ja|en] :2008/08:Selenocysteine Synthase
  • 065 [ja|en] :2005/05:Self-splicing RNA
  • 053 [ja|en] :2004/05:Serpins
  • 037 [ja|en] :2003/01:Serum Albumin
  • 047 [ja|en] :2003/11:Simian Virus 40
  • 150 [ja|en] :2012/06:Sliding Clamps
  • 098 [ja|en] :2008/02:Small Interfering RNA
  • 118 [ja|en] :2009/10:Sodium-Potassium Pump
  • 043 [ja|en] :2003/07:Src Tyrosine Kinase
  • 116 [ja|en] :2009/08:Sulfotransferases
  • 094 [ja|en] :2007/10:Superoxide Dismutase
T
T-Cell Receptor
  • 063 [ja|en] :2005/03:T-Cell Receptor
  • 067 [ja|en] :2005/07:TATA-Binding Protein
  • 025 [ja|en] :2002/01:Thrombin
  • 091 [ja|en] :2007/07:Thymine Dimers
  • 075 [ja|en] :2006/03:Tissue Factor
  • 109 [ja|en] :2009/01:Tobacco Mosaic Virus
  • 143 [ja|en] :2011/11:Toll-like Receptors
  • 073 [ja|en] :2006/01:Topoisomerase
  • 015 [ja|en] :2001/03:Transfer RNA
  • 157 [ja|en] :2013/01:Transfer-Messenger RNA
  • 084 [ja|en] :2006/12:Transposase
  • 046 [ja|en] :2003/10:Trypsin
U
Ubiquitin
  • 060 [ja|en] :2004/12:Ubiquitin
V
Vaults
  • 114 [ja|en] :2009/06:Vaults
  • 155 [ja|en] :2012/11:Vitamin D Receptor
X
Xanthine Oxidoreductase
  • 117 [ja|en] :2009/09:Xanthine Oxidoreductase
Z
Zinc Fingers
  • 087 [ja|en] :2007/03:Zinc Fingers
others
70S Ribosomes
  • 121 [ja|en] :2010/01:70S Ribosomes