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8WMH
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BU of 8wmh by Molmil
Structure of CbCas9 bound to 6-nucleotide complementary DNA substrate
Descriptor: NTS, TS, deadCbCas9, ...
Authors:Zhang, S, Lin, S, Liu, J.J.G.
Deposit date:2023-10-03
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Pro-CRISPR PcrIIC1-associated Cas9 system for enhanced bacterial immunity
Nature, 2024
8WMM
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BU of 8wmm by Molmil
Structure of CbCas9-PcrIIC1 complex bound to 28-bp DNA substrate (20-nt complementary)
Descriptor: MAGNESIUM ION, NTS, PcrIIC1, ...
Authors:Zhang, S, Lin, S, Liu, J.J.G.
Deposit date:2023-10-04
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Pro-CRISPR PcrIIC1-associated Cas9 system for enhanced bacterial immunity
Nature, 2024
8WMN
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BU of 8wmn by Molmil
Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (symmetric 20-nt complementary)
Descriptor: DNA (62-MER), MAGNESIUM ION, PcrIIC1, ...
Authors:Zhang, S, Lin, S, Liu, J.J.G.
Deposit date:2023-10-04
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (2.82 Å)
Cite:Pro-CRISPR PcrIIC1-associated Cas9 system for enhanced bacterial immunity
Nature, 2024
8WR4
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BU of 8wr4 by Molmil
Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (non-targeting complex)
Descriptor: CbCas9 effector-1, DNA (62-MER), MAGNESIUM ION, ...
Authors:Zhang, S, Lin, S, Liu, J.J.G.
Deposit date:2023-10-13
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Pro-CRISPR PcrIIC1-associated Cas9 system for enhanced bacterial immunity
Nature, 2024
8WU5
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BU of 8wu5 by Molmil
The complex of CAG repeat sequence-specific binding cPIP and dsDNA with A-A mismatch
Descriptor: (1^2Z,4^2Z,11^2Z,14^2Z,22^2Z,25^2Z,32^2Z,35^2Z,19R,40R)-1^1,4^1,11^1,14^1,22^1,25^1,32^1,35^1-octamethyl-2,5,9,12,15,20,23,26,30,33,36,41-dodecaoxo-1^1H,4^1H,11^1H,14^1H,22^1H,25^1H,32^1H,35^1H-3,6,10,13,16,21,24,27,31,34,37,42-dodecaaza-1(2,4),11,22,32(4,2)-tetraimidazola-4,14,25,35(4,2)-tetrapyrrolacyclodotetracontaphane-19,40-diaminium, DNA (5'-D(*GP*CP*(CBR)P*GP*AP*GP*CP*AP*GP*CP*AP*CP*GP*GP*C)-3')
Authors:Abe, K, Takeda, K, Sugiyama, H.
Deposit date:2023-10-20
Release date:2024-06-05
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Studies of a Complex of a CAG/CTG Repeat Sequence-Specific Binding Molecule and A–A-Mismatch-Containing DNA
Jacs Au, 4, 2024
8WUS
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BU of 8wus by Molmil
SpCas9-MMLV RT-pegRNA-target DNA complex (termination)
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, DNA (40-MER), DNA (5'-D(*TP*GP*AP*TP*GP*GP*CP*AP*GP*AP*GP*TP*AP*CP*TP*AP*G)-3'), ...
Authors:Yutaro, S, Ryoya, N, Mizuki, H, Satoshi, N.O, Hisato, H, Yuzuru, I, Osamu, N.
Deposit date:2023-10-21
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural basis for pegRNA-guided reverse transcription by the prime editor
Nature, 2024
8WUT
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BU of 8wut by Molmil
SpCas9-MMLV RT-pegRNA-target DNA complex (initiation)
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, DNA (5'-D(*TP*GP*AP*TP*GP*GP*CP*AP*GP*AP*GP*TP*AP*CP*TP*AP*G)-3'), DNA (51-MER), ...
Authors:Yutaro, S, Ryoya, N, Mizuki, H, Satoshi, N.O, Hisato, H, Yuzuru, I, Osamu, N.
Deposit date:2023-10-21
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis for pegRNA-guided reverse transcription by the prime editor
Nature, 2024
8WUU
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BU of 8wuu by Molmil
SpCas9-pegRNA-target DNA complex (pre-initiation)
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, DNA (34-MER), DNA (5'-D(*TP*GP*AP*TP*GP*GP*CP*AP*GP*AP*GP*TP*AP*CP*TP*AP*G)-3'), ...
Authors:Yutaro, S, Ryoya, N, Mizuki, H, Satoshi, N.O, Hisato, H, Yuzuru, I, Osamu, N.
Deposit date:2023-10-21
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural basis for pegRNA-guided reverse transcription by the prime editor
Nature, 2024
8WUV
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BU of 8wuv by Molmil
SpCas9-MMLV RT-pegRNA-target DNA complex (elongation 16-nt)
Descriptor: CRISPR-associated endonuclease Cas9/Csn1, DNA (5'-D(*TP*GP*AP*TP*GP*GP*CP*AP*GP*AP*GP*TP*AP*CP*TP*AP*G)-3'), DNA (50-MER), ...
Authors:Yutaro, S, Ryoya, N, Mizuki, H, Satoshi, N.O, Hisato, H, Yuzuru, I, Nureki, O.
Deposit date:2023-10-21
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis for pegRNA-guided reverse transcription by the prime editor
Nature, 2024
8WWW
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BU of 8www by Molmil
Crystal structure of the adenylation domain of SyAstC
Descriptor: Carrier domain-containing protein, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Li, Z, Zhu, Z, Zhu, D, Shen, Y.
Deposit date:2023-10-27
Release date:2024-06-05
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:Functional Application of the Single-Module NRPS-like d-Alanyltransferase in Maytansinol Biosynthesis
Acs Catalysis, 14, 2024
8X01
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BU of 8x01 by Molmil
Structure of the Mumps Virus L Protein (state2) Bound by Phosphoprotein Tetramer
Descriptor: Phosphoprotein, RNA-directed RNA polymerase L, ZINC ION
Authors:Li, T.H, Shen, Q.T.
Deposit date:2023-11-02
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:Structures of the mumps virus polymerase complex via cryo-electron microscopy.
Nat Commun, 15, 2024
8X0X
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BU of 8x0x by Molmil
Crystal structure of JE-5C in complex with SARS-CoV-2 RBD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of JE-5C Fab, Light chain of JE-5C Fab, ...
Authors:Mohapatra, A, Chen, X.
Deposit date:2023-11-06
Release date:2024-06-05
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:The presence of broadly neutralizing anti-SARS-CoV-2 RBD antibodies elicited by primary series and booster dose of COVID-19 vaccine
Plos Pathog., 2024
8X0Y
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BU of 8x0y by Molmil
Crystal structure of JM-1A in complex with SARS-CoV-2 RBD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Heavy chain of JM-1A Fab, ...
Authors:Mohapatra, A, Chen, X.
Deposit date:2023-11-06
Release date:2024-06-05
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:The presence of broadly neutralizing anti-SARS-CoV-2 RBD antibodies elicited by primary series and booster dose of COVID-19 vaccine
Plos Pathog., 2024
8X6F
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BU of 8x6f by Molmil
Cryo-EM structure of Staphylococcus aureus sigA-dependent RNAP-promoter open complex
Descriptor: DNA (71-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Yuan, L, Xu, L, Liu, Q, Feng, Y.
Deposit date:2023-11-21
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis of promoter recognition by Staphylococcus aureus RNA polymerase
Nat Commun, 2024
8X6G
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BU of 8x6g by Molmil
Cryo-EM structure of Staphylococcus aureus sigB-dependent RNAP-promoter open complex
Descriptor: DNA (70-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Yuan, L, Xu, L, Liu, Q, Feng, Y.
Deposit date:2023-11-21
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis of promoter recognition by Staphylococcus aureus RNA polymerase
Nat Commun, 2024
8X8S
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BU of 8x8s by Molmil
Crystal structure of Cypovirus Polyhedra mutant fused with c-Myc fragment
Descriptor: Polyhedrin,Myc proto-oncogene protein
Authors:Kojima, M, Ueno, T, Abe, S, Hirata, K.
Deposit date:2023-11-28
Release date:2024-06-05
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Screening system for structure determination of intrinsically disordered protein using cell-free protein crystallization
To Be Published
8X8V
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BU of 8x8v by Molmil
Crystal structure of Cypovirus Polyhedra mutant fused with c-Myc fragment
Descriptor: Polyhedrin,Myc proto-oncogene protein
Authors:Kojima, M, Ueno, T, Abe, S, Hirata, K.
Deposit date:2023-11-29
Release date:2024-06-05
Method:X-RAY DIFFRACTION (2 Å)
Cite:Screening system for structure determination of intrinsically disordered protein using cell-free protein crystallization
To Be Published
8XAU
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BU of 8xau by Molmil
Cryo-EM structure of HerA
Descriptor: ATP-binding protein
Authors:Wang, Y, Deng, Z.
Deposit date:2023-12-05
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:Cryo-EM structure of HerA
To Be Published
8XAV
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BU of 8xav by Molmil
Cryo-EM structure of an anti-phage defense complex
Descriptor: ATP-binding protein, DUF4297
Authors:Wang, Y, Deng, Z.
Deposit date:2023-12-05
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (2.87 Å)
Cite:Cryo-EM structure of DUF4297-HerA
To Be Published
8XAW
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BU of 8xaw by Molmil
Cryo-EM structure of an anti-phage defense complex bound to AMPPNP and DNA at state 1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-binding protein, DUF4297, ...
Authors:An, Q, Deng, Z.
Deposit date:2023-12-05
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:Cryo-EM structure of DUF4297Q53AK55A-HerA-AMPPNP-DNA
To Be Published
8XAX
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BU of 8xax by Molmil
Cryo-EM structure of an anti-phage defense complex bound to AMPPNP and DNA at state 2
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-binding protein, DUF4297, ...
Authors:An, Q, Deng, Z.
Deposit date:2023-12-05
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Cryo-EM structure of an anti-phage defense complex
To Be Published
8XAY
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BU of 8xay by Molmil
Cryo-EM structure of an anti-phage defense complex bound to ATPrS and DNA
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-binding protein, DUF4297, ...
Authors:An, Q, Deng, Z.
Deposit date:2023-12-05
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:Cryo-EM structure of an anti-phage complex
To Be Published
8XBS
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BU of 8xbs by Molmil
C. elegans apo-SID1 structure
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gong, D.S.
Deposit date:2023-12-07
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (2.21 Å)
Cite:Structural basis for double-stranded RNA recognition by SID1.
Nucleic Acids Res., 2024
8XC1
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BU of 8xc1 by Molmil
C. elegans SID1 in complex with dsRNA
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gong, D.S.
Deposit date:2023-12-07
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (2.21 Å)
Cite:Structural basis for double-stranded RNA recognition by SID1.
Nucleic Acids Res., 2024
8XJ3
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BU of 8xj3 by Molmil
Crystal structure of methyltransferase CbiL from Akkermansia muciniphila
Descriptor: CbiL
Authors:Guo, S, Jiang, M, Wang, M.
Deposit date:2023-12-20
Release date:2024-06-05
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of methyltransferase CbiL from Akkermansia muciniphila
Biochem.Biophys.Res.Commun., 722, 2024

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PDB entries from 2024-06-05

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