+Open data
-Basic information
Entry | Database: PDB / ID: 2dc0 | ||||||
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Title | Crystal structure of amidase | ||||||
Components | probable amidase | ||||||
Keywords | HYDROLASE / amidase / Structural Genomics / NPPSFA / National Project on Protein Structural and Functional Analyses / RIKEN Structural Genomics/Proteomics Initiative / RSGI | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Thermus thermophilus (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MAD / Resolution: 2 Å | ||||||
Authors | Ohshima, T. / Sakuraba, H. / Ebihara, A. / Kanagawa, M. / Nakagawa, N. / Kuroishi, C. / Satoh, S. / Kuramitsu, S. / Yokoyama, S. / RIKEN Structural Genomics/Proteomics Initiative (RSGI) | ||||||
Citation | Journal: To be Published Title: Crystal structure of amidase Authors: Ohshima, T. / Sakuraba, H. / Ebihara, A. / Kanagawa, M. / Nakagawa, N. / Kuroishi, C. / Satoh, S. / Kuramitsu, S. / Yokoyama, S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2dc0.cif.gz | 173.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2dc0.ent.gz | 142.2 KB | Display | PDB format |
PDBx/mmJSON format | 2dc0.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/dc/2dc0 ftp://data.pdbj.org/pub/pdb/validation_reports/dc/2dc0 | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 46673.281 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Thermus thermophilus (bacteria) / Plasmid: pET11a / Production host: Escherichia coli (E. coli) / References: GenBank: 55773179, UniProt: Q5SHD3*PLUS #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.77 Å3/Da / Density % sol: 55.65 % |
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-Data collection
Diffraction source | Source: SYNCHROTRON / Site: SPring-8 / Beamline: BL26B2 / Wavelength: 1.0, 0.97952, 0.97915 | ||||||||||||
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Detector | Type: RIGAKU JUPITER 210 / Detector: CCD / Date: Dec 22, 2004 | ||||||||||||
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||
Radiation wavelength |
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Reflection | Resolution: 2→46.13 Å / Num. obs: 69835 / Biso Wilson estimate: 20.26 Å2 |
-Processing
Software |
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Refinement | Method to determine structure: MAD / Resolution: 2→46.13 Å
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Refinement step | Cycle: LAST / Resolution: 2→46.13 Å
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