+Open data
-Basic information
Entry | Database: PDB / ID: 1elp | ||||||
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Title | GAMMA-D CRYSTALLIN STRUCTURE AT 1.95 A RESOLUTION | ||||||
Components | GAMMA-D CRYSTALLIN | ||||||
Keywords | EYE LENS PROTEIN | ||||||
Function / homology | Function and homology information structural constituent of eye lens / lens development in camera-type eye / visual perception Similarity search - Function | ||||||
Biological species | Bos taurus (cattle) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / Resolution: 1.95 Å | ||||||
Authors | Chirgadze, Yu.N. / Driessen, H.P.C. / Wright, G. / Slingsby, C. / Hay, R.E. / Lindley, P.F. | ||||||
Citation | Journal: Acta Crystallogr.,Sect.D / Year: 1996 Title: Structure of bovine eye lens gammaD (gammaIIIb)-crystallin at 1.95 A. Authors: Chirgadze, Y.N. / Driessen, H.P. / Wright, G. / Slingsby, C. / Hay, R.E. / Lindley, P.F. #1: Journal: Exp.Eye Res. / Year: 1991 Title: Crystal Structure of Calf Eye Lens Gamma-Crystallin Iiib at 2.5 A Resolution: Its Relation to Function Authors: Chirgadze, Yu. / Nevskaya, N. / Vernoslova, E. / Nikonov, S. / Sergeev, Yu. / Brazhnikov, E. / Fomenkova, N. / Lunin, V. / Urzhumtsev, A. #2: Journal: Proteins / Year: 1988 Title: Surface Interactions of Gamma-Crystallins in the Crystal Medium in Relation to Their Association in the Eye Lens Authors: Sergeev, Y.V. / Chirgadze, Y.N. / Mylvaganam, S.E. / Driessen, H. / Slingsby, C. / Blundell, T.L. #3: Journal: Mol.Biol.(Moscow) / Year: 1987 Title: [the Key Role of the Residue 103 in the Surface Interactions of Gamma-Crystallins] Authors: Sergeev, Iu.V. / Chirgadze, Iu.N. / Driessen, H. / Slingsby, C. / Blundell, T.L. #4: Journal: Mol.Biol.(Engl.Transl.) / Year: 1987 Title: Key Role of Residue 103 in Surface Interactions of Gamma-Crystallins Authors: Sergeev, Yu.V. / Chirgadze, Yu.N. / Driessen, H. / Slingsby, C. / Blundell, T.L. #5: Journal: Dokl.Akad.Nauk Sssr / Year: 1986 Title: Spatial Structure of Gamma-Crystallin Iiib from Calf Eye Lens at 2.5 Angstroms Resolution Authors: Chirgadze, Yu.N. / Nevskaya, N.A. / Fomenkova, N.P. / Nikonov, S.V. / Sergeev, Yu.V. / Brazhnikov, E.V. / Garber, M.B. / Lunin, V.Yu. / Urzumtsev, A.P. / Vernoslova, E.A. #6: Journal: Acta Crystallogr.,Sect.A / Year: 1985 Title: Phase Improvement in Protein Crystallography Using a Mixed Electron Density Model Authors: Lunin, V.Yu. / Urzhumtsev, A.G. / Vernoslova, E.A. / Chirgadze, Yu.N. / Nevskaya, N.A. / Fomenkova, N.P. #7: Journal: Acta Crystallogr.,Sect.A / Year: 1984 Title: Improvement of Protein Phases by Coarse Model Modification Authors: Lunin, V.Yu. / Urzhumtsev, A.G. #8: Journal: Dokl.Akad.Nauk Sssr / Year: 1981 Title: Structure of Gamma-Crystallin Iiib from the Eye Lens of the Calf at 3 Angstroms Resolution Authors: Chirgadze, Yu.N. / Sergeev, Yu.V. / Fomenkova, N.P. / Oreshin, V.D. / Nikonov, S.V. #9: Journal: FEBS Lett. / Year: 1981 Title: Polypeptide Chain Pathway in Gamma-Crystallin Iiib from Calf Lens at 3 A Resolution Authors: Chirgadze, Yu.N. / Sergeev, Yu.V. / Fomenkova, N.P. / Oreshin, V.D. #10: Journal: FEBS Lett. / Year: 1980 Title: Structure of Gamma-Crystallin Iiib from Calf Lens at 5 A Resolution Authors: Chirgadze, Y.N. / Oreshin, V.D. / Sergeev, Y.V. / Nikonov, S.V. / Lunin, V.Y. #11: Journal: J.Mol.Biol. / Year: 1977 Title: Crystallographic Study of Gamma-Crystallins from Calf Lens Authors: Chirgadze, Y.N. / Nikonov, S.V. / Garber, M.B. / Reshetnikova, L.S. #12: Journal: Dokl.Akad.Nauk Sssr / Year: 1976 Title: Growing Single Crystals of Gamma Crystallin from the Calf Crystalline Lens Authors: Garber, M.B. / Reshetnikova, L.S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1elp.cif.gz | 88.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1elp.ent.gz | 68.1 KB | Display | PDB format |
PDBx/mmJSON format | 1elp.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/el/1elp ftp://data.pdbj.org/pub/pdb/validation_reports/el/1elp | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 20778.236 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Bos taurus (cattle) / Organ: EYE / Tissue: EYE LENSLens (anatomy) / References: UniProt: P08209 #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.85 Å3/Da / Density % sol: 56.91 % | |||||||||||||||
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Crystal | *PLUS Density % sol: 57 % | |||||||||||||||
Crystal grow | *PLUS Temperature: 5 ℃ / pH: 7 / Method: unknown | |||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 277 K |
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Diffraction source | Source: SYNCHROTRON / Site: SRS / Beamline: PX9.5 / Wavelength: 0.92 |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.92 Å / Relative weight: 1 |
Reflection | Num. obs: 33667 / % possible obs: 95.2 % / Observed criterion σ(I): 3 / Redundancy: 4.3 % / Rmerge(I) obs: 0.081 |
Reflection | *PLUS Highest resolution: 1.95 Å / Num. measured all: 144932 |
-Processing
Software |
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Refinement | Resolution: 1.95→8 Å / σ(F): 0
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Refinement step | Cycle: LAST / Resolution: 1.95→8 Å
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Refine LS restraints |
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Software | *PLUS Name: RESTRAIN / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Rfactor obs: 0.204 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |