[English] 日本語
Yorodumi- PDB-1blb: CLOSE PACKING OF AN OLIGOMERIC EYE LENS BETA-CRYSTALLIN INDUCES L... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1blb | ||||||
---|---|---|---|---|---|---|---|
Title | CLOSE PACKING OF AN OLIGOMERIC EYE LENS BETA-CRYSTALLIN INDUCES LOSS OF SYMMETRY AND ORDERING OF SEQUENCE EXTENSIONS | ||||||
Components | BETA B2-CRYSTALLIN | ||||||
Keywords | EYE LENS PROTEIN | ||||||
Function / homology | Function and homology information structural constituent of eye lens / lens development in camera-type eye / visual perception / identical protein binding Similarity search - Function | ||||||
Biological species | Bos taurus (cattle) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 3.3 Å | ||||||
Authors | Nalini, V. / Bax, B. / Driessen, H. / Moss, D.S. / Lindley, P.F. / Slingsby, C. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1994 Title: Close packing of an oligomeric eye lens beta-crystallin induces loss of symmetry and ordering of sequence extensions. Authors: Nalini, V. / Bax, B. / Driessen, H. / Moss, D.S. / Lindley, P.F. / Slingsby, C. #1: Journal: Acta Crystallogr.,Sect.B / Year: 1991 Title: Structure of Oligomeric Betab2-Crystallin: An Application of the T2 Translation Function to an Asymmetric Unit Containing Two Dimers Authors: Driessen, H.P.C. / Bax, B. / Slingsby, C. / Lindley, P.F. / Mahadevan, D. / Moss, D.S. / Tickle, I. #2: Journal: J.Mol.Biol. / Year: 1982 Title: Preliminary X-Ray Crystallographic Study of the Principle Subunit of the Lens Structural Protein, Bovine Beta-Crystallin Authors: Slingsby, C. / Miller, L.R. / Berbers, G.A.M. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 1blb.cif.gz | 138 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb1blb.ent.gz | 106.6 KB | Display | PDB format |
PDBx/mmJSON format | 1blb.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/bl/1blb ftp://data.pdbj.org/pub/pdb/validation_reports/bl/1blb | HTTPS FTP |
---|
-Related structure data
Similar structure data |
---|
-Links
-Assembly
Deposited unit |
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
2 |
| ||||||||
Unit cell |
| ||||||||
Atom site foot note | 1: CIS PROLINE - PRO A 41 / 2: CIS PROLINE - PRO B 41 / 3: CIS PROLINE - PRO C 41 / 4: CIS PROLINE - PRO D 41 |
-Components
#1: Protein | Mass: 23197.621 Da / Num. of mol.: 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Bos taurus (cattle) / Tissue: LENS / References: UniProt: P02522 Sequence details | THE SEQUENCE PRESENTED IN THIS ENTRY DIFFERS FROM THAT OF SWISS-PROT ENTRY CRB2_BOVINE WHICH WAS ...THE SEQUENCE PRESENTED IN THIS ENTRY DIFFERS FROM THAT OF SWISS-PROT ENTRY CRB2_BOVINE WHICH WAS BASED ON THE AUTHOR'S PREVIOUS WORK (H.P.C. DRIESSEN ET AL. (1981). EUR. J. BIOCHEM. VOLUME 121, PAGES 83 - 91). SUBSEQUENT | |
---|
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
---|
-Sample preparation
Crystal | Density Matthews: 2.71 Å3/Da / Density % sol: 54.64 % | |||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Crystal | *PLUS Density % sol: 54 % | |||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 5 ℃ / Method: vapor diffusion, hanging drop / PH range low: 7.2 / PH range high: 6.8 | |||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
|
-Data collection
Radiation | Scattering type: x-ray |
---|---|
Radiation wavelength | Relative weight: 1 |
-Processing
Software |
| ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Highest resolution: 3.3 Å | ||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 3.3 Å
| ||||||||||||
Refinement | *PLUS Highest resolution: 2.6 Å / Rfactor obs: 0.205 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS | ||||||||||||
Refine LS restraints | *PLUS
|