+Open data
-Basic information
Entry | Database: EMDB / ID: EMD-34828 | |||||||||
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Title | AtALMT9 in the apo state | |||||||||
Map data | ||||||||||
Sample |
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Keywords | CHANNEL / TRANSPORT PROTEIN | |||||||||
Function / homology | malate transport / Aluminum-activated malate transporter / Aluminium activated malate transporter / plant-type vacuole membrane / monoatomic anion channel activity / Aluminum-activated malate transporter 9 Function and homology information | |||||||||
Biological species | Arabidopsis thaliana (thale cress) | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 3.34 Å | |||||||||
Authors | Gong DS | |||||||||
Funding support | China, 1 items
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Citation | Journal: To Be Published Title: AtALMT9 in the apo state Authors: Gong DS | |||||||||
History |
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-Structure visualization
Supplemental images |
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-Downloads & links
-EMDB archive
Map data | emd_34828.map.gz | 59.6 MB | EMDB map data format | |
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Header (meta data) | emd-34828-v30.xml emd-34828.xml | 12.7 KB 12.7 KB | Display Display | EMDB header |
FSC (resolution estimation) | emd_34828_fsc.xml | 8.4 KB | Display | FSC data file |
Images | emd_34828.png | 231.8 KB | ||
Filedesc metadata | emd-34828.cif.gz | 5.3 KB | ||
Others | emd_34828_half_map_1.map.gz emd_34828_half_map_2.map.gz | 59.2 MB 59.2 MB | ||
Archive directory | http://ftp.pdbj.org/pub/emdb/structures/EMD-34828 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-34828 | HTTPS FTP |
-Related structure data
Related structure data | 8hiwMC M: atomic model generated by this map C: citing same article (ref.) |
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Similar structure data | Similarity search - Function & homologyF&H Search |
-Links
EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
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-Map
File | Download / File: emd_34828.map.gz / Format: CCP4 / Size: 64 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||
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Voxel size | X=Y=Z: 1.0742 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: #2
File | emd_34828_half_map_1.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Half map: #1
File | emd_34828_half_map_2.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Sample components
-Entire : Dimer of AtALMT9
Entire | Name: Dimer of AtALMT9 |
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Components |
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-Supramolecule #1: Dimer of AtALMT9
Supramolecule | Name: Dimer of AtALMT9 / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1 |
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Source (natural) | Organism: Arabidopsis thaliana (thale cress) |
-Macromolecule #1: Aluminum-activated malate transporter 9
Macromolecule | Name: Aluminum-activated malate transporter 9 / type: protein_or_peptide / ID: 1 / Number of copies: 2 / Enantiomer: LEVO |
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Source (natural) | Organism: Arabidopsis thaliana (thale cress) |
Molecular weight | Theoretical: 67.121008 KDa |
Recombinant expression | Organism: Spodoptera frugiperda (fall armyworm) |
Sequence | String: MAAKQGSFRH GILEKRERLL SNNGFSDFRF TDIESNDLLE NENCGRRTRL CCCCSCGNLS EKISGVYDDA KDVARKAWEM GVSDPRKIV FSAKIGLALT IVALLIFYQE PNPDLSRYSV WAILTVVVVF EFTIGATLSK GFNRALGTLS AGGLALGMAE L STLFGDWE ...String: MAAKQGSFRH GILEKRERLL SNNGFSDFRF TDIESNDLLE NENCGRRTRL CCCCSCGNLS EKISGVYDDA KDVARKAWEM GVSDPRKIV FSAKIGLALT IVALLIFYQE PNPDLSRYSV WAILTVVVVF EFTIGATLSK GFNRALGTLS AGGLALGMAE L STLFGDWE EIFCTLSIFC IGFLATFMKL YPSMKAYEYG FRVFLLTYCY ILISGFRTGQ FIEVAISRFL LIALGAGVSL GV NMFIYPI WAGEDLHNLV VKNFMNVATS LEGCVNGYLR CLEYERIPSK ILTYQASEDP VYKGYRSAVE STSQEESLMS FAI WEPPHG PYKSFNYPWK NYVKLSGALK HCAFTVMALH GCILSEIQAP EERRQVFRQE LQRVGVEGAK LLRELGEKVK KMEK LGPVD LLFEVHLAAE ELQHKIDKKS YLLVNSECWE IGNRATKESE PQELLSLEDS DPPENHAPPI YAFKSLSEAV LEIPP SWGE KNHREALNHR PTFSKQVSWP ARLVLPPHLE TTNGASPLVE TTKTYESASA LSLATFASLL IEFVARLQNV VDAFKE LSQ KANFKEPEIV TTGTDVEFSG ERVGLGQKIR RCFGM UniProtKB: Aluminum-activated malate transporter 9 |
-Macromolecule #2: CITRIC ACID
Macromolecule | Name: CITRIC ACID / type: ligand / ID: 2 / Number of copies: 1 / Formula: CIT |
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Molecular weight | Theoretical: 192.124 Da |
Chemical component information | ChemComp-CIT: |
-Experimental details
-Structure determination
Method | cryo EM |
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Processing | single particle reconstruction |
Aggregation state | particle |
-Sample preparation
Buffer | pH: 8 |
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Vitrification | Cryogen name: ETHANE |
-Electron microscopy
Microscope | FEI TITAN KRIOS |
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Electron beam | Acceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELDBright-field microscopy / Nominal defocus max: 1.8 µm / Nominal defocus min: 1.3 µm |
Image recording | Film or detector model: GATAN K2 QUANTUM (4k x 4k) / Average electron dose: 50.0 e/Å2 |
Experimental equipment | Model: Titan Krios / Image courtesy: FEI Company |