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TitleMechanistic Insights Revealed by YbtPQ in the Occluded State.
Journal, issue, pagesBiomolecules, Vol. 14, Issue 3, Year 2024
Publish dateMar 8, 2024
AuthorsWenxin Hu / Chance Parkinson / Hongjin Zheng /
PubMed AbstractRecently, several ATP-binding cassette (ABC) importers have been found to adopt the typical fold of type IV ABC exporters. Presumably, these importers would function under the transport scheme of ...Recently, several ATP-binding cassette (ABC) importers have been found to adopt the typical fold of type IV ABC exporters. Presumably, these importers would function under the transport scheme of "alternating access" like those exporters, cycling through inward-open, occluded, and outward-open conformations. Understanding how the exporter-like importers move substrates in the opposite direction requires structural studies on all the major conformations. To shed light on this, here we report the structure of yersiniabactin importer YbtPQ from uropathogenic in the occluded conformation trapped by ADP-vanadate (ADP-Vi) at a 3.1 Å resolution determined by cryo-electron microscopy. The structure shows unusual local rearrangements in multiple helices and loops in its transmembrane domains (TMDs). In addition, the dimerization of the nucleotide-binding domains (NBDs) promoted by the vanadate trapping is highlighted by the "screwdriver" action at one of the two hinge points. These structural observations are rare and thus provide valuable information to understand the structural plasticity of the exporter-like ABC importers.
External linksBiomolecules / PubMed:38540742 / PubMed Central
MethodsEM (single particle)
Resolution3.1 Å
Structure data

EMDB-43498, PDB-8vsi:
Mechanistic Insights Revealed by YbtPQ in the Occluded State
Method: EM (single particle) / Resolution: 3.1 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-AOV:
ADP ORTHOVANADATE / energy-carrying molecule analogue*YM

Source
  • escherichia coli (E. coli)
KeywordsMEMBRANE PROTEIN / ABC importer / siderophore / occluded

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