[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 63 items for (author: baron & s)

EMDB-19066:
TREK2 in OGNG/CHS detergent micelle with biparatopic inhibitory nanobody Nb6158
Method: single particle / : Smith KHM, Tucker SJ

EMDB-27269:
Cryo-EM structure of human DELE1 in oligomeric form
Method: single particle / : Yang J, Lander GC

PDB-8d9x:
Cryo-EM structure of human DELE1 in oligomeric form
Method: single particle / : Yang J, Lander GC

EMDB-26999:
CryoEM structure of the T-pilus from Agrobacterium tumefaciens
Method: single particle / : Bui KH, Black CS

EMDB-27023:
CryoEM structure of the N-pilus from Escherichia coli
Method: single particle / : Bui KH, Black CS

PDB-8cue:
CryoEM structure of the T-pilus from Agrobacterium tumefaciens
Method: single particle / : Bui KH, Black CS

PDB-8cw4:
CryoEM structure of the N-pilus from Escherichia coli
Method: single particle / : Bui KH, Black CS

EMDB-28089:
a22L prion fibril
Method: helical / : Hoyt F, Caughey B

PDB-8efu:
a22L prion fibril
Method: helical / : Hoyt F, Caughey B

EMDB-25824:
aRML prion fibril
Method: single particle / : Hoyt F, Standke HG, Artikis E, Caughey B, Kraus A

PDB-7td6:
aRML prion fibril
Method: single particle / : Hoyt F, Standke HG, Artikis E, Caughey B, Kraus A

EMDB-27203:
IMM20190 Fab complex with SARS-CoV-2 Spike Trimer
Method: single particle / : Nikitin PA, DiMuzio JD, Dowling JP, Patel NB, Bingaman-Steele JL, Heimbach BC, Henriquez N, Nicolescu C, Polley A, Sikorski EL, Howanski RJ, Nath M, Shukla H, Scheaffer SM, Finn JP, Liang LF, Smith T, Storm N, McKay LGA, Johnson RI, Malsick LE, Honko AN, Griffiths A, Diamond MS, Sarma P, Geising DH, Morin MJ, Robinson MK

EMDB-27192:
IMM20253 Fab complex with Trimer Spike protein of SARS-CoV-2 virus
Method: single particle / : Nikitin PA, DiMuzio JD, Dowling JP, Patel NB, Bingaman-Steele JL, Heimbach BC, Henriquez N, Nicolescu C, Polley A, Sikorski EL, Howanski RJ, Nath M, Shukla H, Scheaffer SM, Finn JP, Liang LF, Smith T, Storm N, McKay LGA, Johnson RI, Malsick LE, Honko AN, Griffiths A, Diamond MS, Sarma P, Geising DH, Morin MJ, Robinson MK

EMDB-27193:
IMM20253 Fab complex with Spike monomer
Method: single particle / : Nikitin PA, DiMuzio JD, Dowling JP, Patel NB, Bingaman-Steele JL, Heimbach BC, Henriquez N, Nicolescu C, Polley A, Sikorski EL, Howanski RJ, Nath M, Shukla H, Scheaffer SM, Finn JP, Liang LF, Smith T, Storm N, McKay LGA, Johnson RI, Malsick LE, Honko AN, Griffiths A, Diamond MS, Sarma P, Geising DH, Morin MJ, Robinson MK

EMDB-27204:
IMM20184 Fab complex with SARS-CoV-2 Spike Trimer
Method: single particle / : Nikitin PA, DiMuzio JD, Dowling JP, Patel NB, Bingaman-Steele JL, Heimbach BC, Henriquez N, Nicolescu C, Polley A, Sikorski EL, Howanski RJ, Nath M, Shukla H, Scheaffer SM, Finn JP, Liang LF, Smith T, Storm N, McKay LGA, Johnson RI, Malsick LE, Honko AN, Griffiths A, Diamond MS, Sarma P, Geising DH, Morin MJ, Robinson MK

EMDB-27081:
IMM20184 and IMM20253 Fabs in ternary complex with SARS-CoV-2 receptor binding domain
Method: single particle / : Robinson MK, Nikitin PN

EMDB-12566:
Structure of human excitatory amino acid transporter 3 (EAAT3) in complex with HIP-B
Method: single particle / : Baronina A, Pike ACW, Yu X, Dong YY, Shintre CA, Tessitore A, Chu A, Rotty B, Venkaya S, Mukhopadhyay SMM, Borkowska O, Chalk R, Shrestha L, Burgess-Brown NA, Edwards AM, Arrowsmith CH, Bountra C, Han S, Carpenter EP, Structural Genomics Consortium (SGC)

PDB-7nsg:
Structure of human excitatory amino acid transporter 3 (EAAT3) in complex with HIP-B
Method: single particle / : Baronina A, Pike ACW, Yu X, Dong YY, Shintre CA, Tessitore A, Chu A, Rotty B, Venkaya S, Mukhopadhyay SMM, Borkowska O, Chalk R, Shrestha L, Burgess-Brown NA, Edwards AM, Arrowsmith CH, Bountra C, Han S, Carpenter EP, Structural Genomics Consortium (SGC)

EMDB-12158:
CryoEM structure of Mycobacterium tuberculosis UMP Kinase (UMPK) in complex with UDP and UTP
Method: single particle / : Bous J, Trapani S, Walter P, Bron P, Munier-Lehmann H

PDB-7bes:
CryoEM structure of Mycobacterium tuberculosis UMP Kinase (UMPK) in complex with UDP and UTP
Method: single particle / : Bous J, Trapani S, Walter P, Bron P, Munier-Lehmann H

EMDB-23459:
Infectious mammalian prion fibril (263K scrapie)
Method: single particle / : Kraus A, Hoyt F, Schwartz CL, Hansen B, Hughson AG, Artikis E, Race B, Caughey B

PDB-7lna:
Infectious mammalian prion fibril (263K scrapie)
Method: single particle / : Kraus A, Hoyt F, Schwartz CL, Hansen B, Hughson AG, Artikis E, Race B, Caughey B

EMDB-11440:
Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)
Method: single particle / : Plassart L, Shayan R

EMDB-11441:
Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)
Method: single particle / : Plassart L, Shayan R, Plisson-Chastang C

EMDB-11442:
Human pre-40S particle purified using RIO1(kd)-StHA as bait - Structural State B, Body
Method: single particle / : Plassart L, Shayan R, Plisson-Chastang C

EMDB-11443:
Human pre-40S particle purified using RIO1(kd)-StHA as bait - Structural State B, Head
Method: single particle / : Plassart L, Shayan R, Plisson-Chastang C

EMDB-11444:
Human pre-40S particle purified using RIO1(kd)-StHA as bait - Structural state B, platform
Method: single particle / : Plassart L, Shayan R, Plisson-Chastang C

EMDB-11445:
Human pre-40S particle purified using RIO1(kd)-StHA as bait - Structural state A, body
Method: single particle / : Plassart L, Shayan R, Plisson-Chastang C

EMDB-11446:
Human pre-40S particle purified using RIO1(kd)-StHA as bait - Structural state A, head
Method: single particle / : Plassart L, Shayan R, Plisson-Chastang C

EMDB-11447:
Human pre-40S particle purified using RIO1(kd)-StHA as bait - Structural state A, platform
Method: single particle / : Plassart L, Shayan R, Plisson-Chastang C

PDB-6zuo:
Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)
Method: single particle / : Plassart L, Shayan R, Plisson-Chastang C

PDB-6zv6:
Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)
Method: single particle / : Plassart L, Shayan R, Plisson-Chastang C

EMDB-10094:
Structure of human excitatory amino acid transporter 3 (EAAT3) in complex with TFB-TBOA
Method: single particle / : Baronina A, Pike ACW

PDB-6s3q:
Structure of human excitatory amino acid transporter 3 (EAAT3) in complex with TFB-TBOA
Method: single particle / : Baronina A, Pike ACW, Yu X, Dong YY, Shintre CA, Tessitore A, Chu A, Rotty B, Venkaya S, Mukhopadhyay S, Borkowska O, Chalk R, Shrestha L, Burgess-Brown NA, Edwards AM, Arrowsmith CH, Bountra C, Han S, Carpenter EP, Structural Genomics Consortium (SGC)

EMDB-10713:
Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)
Method: single particle / : Shayan R, Plassart L

EMDB-10715:
Yeast Tsr1-FPZ pre-40S particle - consensus structure
Method: single particle / : Shayan R, Plassart L, Plisson-Chastang C

EMDB-10716:
head domain of Tsr1-FPZ pre-40S particle: structural class 1 (H1)
Method: single particle / : Shayan R, Plassart L, Plisson-Chastang C

EMDB-10717:
head domain of Tsr1-FPZ pre-40S particle: structural class 2 (H2)
Method: single particle / : Shayan R, Plassart L, Plisson-Chastang C

EMDB-10718:
Platform domain of Tsr1-FPZ pre-40S particle: structural class 1 (P1)
Method: single particle / : Shayan R, Plassart L, Plisson-Chastang C

EMDB-10719:
Platform domain of Tsr1-FPZ pre-40S particle: structural class 2 (P2)
Method: single particle / : Shayan R, Plassart L, Plisson-Chastang C

PDB-6y7c:
Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)
Method: single particle / : Shayan R, Plassart L, Plisson-Chastang C

EMDB-20794:
Integrin alpha-v beta-8 in complex with latent TGF-beta (Primary map: sharpened. Additional map: unsharpened.)
Method: single particle / : Campbell MG, Cormier A, Cheng Y, Nishimura SL

EMDB-20795:
Integrin alpha-v beta-8 in complex with Fabs C6D4 and 11D12v2 (Primary map: sharpened, focused refinement. Five additional maps.)
Method: single particle / : Campbell MG, Cormier A, Cheng Y, Nishimura SL

EMDB-20796:
Integrin alpha-v beta-8 in complex with Fabs C6-RGD3 and 11D12v2 (Primary map: sharpened, focused refinement. Five additional maps.)
Method: single particle / : Campbell MG, Cormier A, Cheng Y, Nishimura SL

EMDB-20797:
Integrin alpha-v beta-8 in complex with latent TGF-beta, Conformation i (Primary map: sharpened. Additional map: unsharpened.)
Method: single particle / : Campbell MG, Cormier A, Cheng Y, Nishimura SL

EMDB-20798:
Integrin alpha-v beta-8 in complex with latent TGF-beta, Conformation ii (Primary map: sharpened. Additional map: unsharpened.)
Method: single particle / : Campbell MG, Cormier A, Cheng Y, Nishimura SL

EMDB-20799:
Integrin alpha-v beta-8 in complex with latent TGF-beta, Conformation iii (Primary map: sharpened. Additional map: unsharpened.)
Method: single particle / : Campbell MG, Cormier A, Cheng Y, Nishimura SL

EMDB-20800:
Integrin alpha-v beta-8 in complex with latent TGF-beta, Conformation v (Primary map: sharpened. Additional map: unsharpened.)
Method: single particle / : Campbell MG, Cormier A, Cheng Y, Nishimura SL

EMDB-20801:
Integrin alpha-v beta-8 in complex with latent TGF-beta, Conformation vi (Primary map: sharpened. Additional map: unsharpened.)
Method: single particle / : Campbell MG, Cormier A, Cheng Y, Nishimura SL

EMDB-20802:
Integrin alpha-v beta-8 in complex with latent TGF-beta, Conformation vii (Primary map: sharpened. Additional map: unsharpened.)
Method: single particle / : Campbell MG, Cormier A, Cheng Y, Nishimura SL

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more