3D Electron Microscopy (3D-EM) Data Navigator [English / 日本語]
Database-ID  | Resolution | Resolution Method | CTF correction | 3D reconstruction Algorithm | 3D reconstruction Software |
|---|---|---|---|---|---|
| EMDB-1942 | 8.9 | FSC 0.5 | EACH PARTICLE corrected using bsoft | PFT | EM3DR |
| EMDB-1990 | 8.9 | FSC 0.5 | EACH PARTICLE | IHRSR | SPARX |
| EMDB-2279 | 8.9 | FSC 0.5 | AUTO3DEM | ||
| EMDB-2325 | 8.9 | Gold-standard FSC 0.143 | EACH FILM/CCD | Fourier | EMAN |
| EMDB-5195 | 8.9 | FSC 0.5 is 8.9 Angstroms Fourier layerlines extend to better than 9 Armstrong | EACH FILM/CCD | SPIDER | |
| PDB-2p8z | 8.9 | 3D MAPS by WIENER FILTER | projection matching, conjugate gradients with regularization | ||
| PDB-2wwa | 8.9 | DEFOCUS GROUP VOLUMES | projection matching | ||
| PDB-3jyv | 8.9 | ||||
| PDB-3jyw | 8.9 | ||||
| PDB-3jyx | 8.9 | ||||
| PDB-4a7n | 8.9 | EACH PARTICLE | IHRSR | ||
| EMDB-1015 | 9.0 | fsc = 0.5 between independent reconstructions | ctf multiplication and summation of normalized reconstructions | FOURIER BESSEL | EMBL-ICOS |
| EMDB-1018 | 9.0 | FSC 0.5 | ctf multiplication and summation of normalized reconstructions | FOURIER BESSEL | EMBL |
| EMDB-1055 | 9.0 | FSC CUTOFF at 0.15 | segregation in defocus groups and correction in volumes | REFERENCE BASEDalignement | Spider |
| EMDB-1056 | 9.0 | FSC CUTOFF at 0.15 | segregation in defocus groups and correction in volumes | REFERENCE BASEDalignement | Spider |
| EMDB-1121 | 9.0 | FSC 0.5 | EACH PARTICLE | model-based common line | Purdue Suite |
| EMDB-1132 | 9.0 | layerline statistics | corrected averaged layerlines | helical RECONSTRUCTION | BRANDEIS HELICAL |
| EMDB-1165 | 9.0 | FSC 0.5 | SAVR per frame | Fourier common line | SAVR |
| EMDB-1340 | 9.0 | FSC 0.5 | was integrated into the back-projection process | Model reference | SPIDER |
| EMDB-1431 | 9.0 | FSC 0.5 | PHASE FLIP > EACH PARTICLE | SPIDER | |
| EMDB-1529 | 9.0 | each image | MRC | ||
| EMDB-1532 | 9.0 | FSC 0.5 | Each microscoph | common line | IMIRS |
| EMDB-1533 | 9.0 | FSC 0.5 | EACH FILM/CCD | common line | IMIRS |
| EMDB-1562 | 9.0 | FSC 0.5 | |||
| EMDB-1563 | 9.0 | FSC 0.5 | |||
| EMDB-1565 | 9.0 | FSC 0.5 | defocus groups, WIENER FILTER | weighted back projection | Spider |
| EMDB-1589 | 9.0 | FSC 0.5 | CTF2, CTFTILT | helical, single particle | SPIDER |
| EMDB-1655 | 9.0 | FSC 0.5 | EACH PARTICLE | common line | EMAN |
| EMDB-1724 | 9.0 | FSC 0.5 | Local | projection matching | IMAGIC, HOME MADE, Spider |
| EMDB-1966 | 9.0 | Visual inspection of lattice lines | TTREFINE | Origin refinement | MRC |
| EMDB-1992 | 9.0 | FSC 0.5 | WHOLE FILM/CCD | projection matching | EMAN, SPARX |
| EMDB-2347 | 9.0 | Phase residuals | EACH FILM/CCDs | MRC | |
| EMDB-5192 | 9.0 | FSC 0.5 is 9.3 AND Fourier layerlines extend to better than 9 Armstrong | EACH FILM/CCD | SPIDER | |
| EMDB-5206 | 9.0 | FSC 0.5 | no CTF correction | common line | MPSA |
| EMDB-5327 | 9.0 | FSC 0.5 | By defocus groups | Multi-particle refinement | SPIDER |
| EMDB-5354 | 9.0 | FSC 0.25 | EACH FILM/CCD | IHRSR | SPIDER, IHRSR |
| EMDB-5372 | 9.0 | FSC 0.5 | micrograph | PFT | PFT |
| EMDB-5475 | 9.0 | FSC 0.5 | AUTO3DEM | common line | AUTO3DEM, CTFFIND, autopp, Robem |
| EMDB-5607 | 9.0 | FSC 0.5 | each defocus group on 3D level | Reference PROJECTION | SPIDER |
| EMDB-5668 | 9.0 | FSC 0.5 | EACH PARTICLE | projection matching | EMAN, SPARX, FREALIGN |
| EMDB-5669 | 9.0 | FSC 0.5 | EACH PARTICLE | projection matching | EMAN, SPARX, FREALIGN |
| PDB-1dyl | 9.0 | MODEL-BASED, POLAR-FOURIER- TRANSFORMATION (FULLER ET AL. 1996, J.STRUC.BIOL. 116, 48-55, BAKER, CHENG 1996, J.STRUC.BIOL. 116, 120- 130) MODEL-BASED CROSS COMMOM LINES SEARCH, REFINEMENT (CROWTHER ET AL. 1970, NATURE (LONDON) 226, 421- 425, FULLER ET AL. 1996, J.STRUC.BIOL. 11 48-55, FERLENGHI ET AL. 1998, J.MOL.BIOL. 283, 71-81) | |||
| PDB-1qzb | 9.0 | 3D MAPS by WIENER FILTER | projection matching, conjugate gradient with regularization | ||
| PDB-1qzc | 9.0 | 3D MAPS by WIENER FILTER | projection matching, conjugate gradient with regularization | ||
| PDB-1r2w | 9.0 | Reference-guided alignment | |||
| PDB-1r2x | 9.0 | REFERENCE BASEDalignment | |||
| PDB-1z8y | 9.0 | Fourier transform of each image was modified | common line | ||
| PDB-2p4n | 9.0 | was integrated into the back projection process with a customized C program | back projection with integrated CTF correction | ||
| PDB-2w6d | 9.0 | ||||
| PDB-2wvw | 9.0 | EACH PARTICLE | STANDARD EMAN REFINE PROCEDURE | ||
| PDB-2xfb | 9.0 | ||||
| PDB-2xfc | 9.0 | ||||
| PDB-3dik | 9.0 | 2D crystallography | |||
| PDB-3e1a | 9.0 | single particle | |||
| PDB-3e1b | 9.0 | single particle | |||
| PDB-3e1c | 9.0 | single particle | |||
| PDB-3e1d | 9.0 | single particle | |||
| PDB-3ep2 | 9.0 | single particle | |||
| PDB-3epd | 9.0 | ||||
| PDB-3epf | 9.0 | ||||
| PDB-3eq3 | 9.0 | single particle | |||
| PDB-3iyx | 9.0 | 3D MAPS by WIENER FILTER | single particle | SPIDER | |
| PDB-3j0o | 9.0 | EACH DEFOCUS GROUP VOLUME PRIOR TO BACK PROJECTION | single particle | SPIDER | |
| PDB-3j0s | 9.0 | FSC 0.25 | EACH FILM/CCD | IHRSR | SPIDER, IHRSR |
| PDB-3j24 | 9.0 | AUTO3DEM | common line | AUTO3DEM, CTFFIND, autopp, Robem | |
| PDB-3j3t | 9.0 | FSC 0.5 | each defocus group on 3D level | Reference PROJECTION | SPIDER |
| PDB-3muw | 9.0 | EACH PARTICLE | model-based common line | ||
| EMDB-1263 | 9.1 | FSC 0.5 | spider | ||
| EMDB-1430 | 9.1 | FSC 0.5 | 3D MAPS | back projection | SPIDER |
| EMDB-1434 | 9.1 | FSC 0.5 | CTFFIND3 and TRANSFER, IMAGIC 5 | common line, projection matching | IMAGIC |
| EMDB-1569 | 9.1 | FSC - half-bit | CTFFIND3 and TRANSFER, IMAGIC 5 | IMAGIC | |
| EMDB-1742 | 9.1 | FSC 0.15 | By defocus groups (WIENER FILTER) | single particle | Spider, xmipp |
| EMDB-5149 | 9.1 | FSC 0.5 | ROBEM | iterative model-based procedure | AUTO3DEM |
| EMDB-5164 | 9.1 | FSC 0.5 | in FREALIGN | single particle | SPIDER, FREALIGN |
| EMDB-5166 | 9.1 | FSC 0.5 | in FREALIGN | single particle | SPIDER, FREALIGN |
| EMDB-5167 | 9.1 | FSC 0.5 | in FREALIGN | single particle | SPIDER, FREALIGN |
| EMDB-5292 | 9.1 | FSC 0.5 | CTF and decay correction of EACH PARTICLE | FOURIER BESSEL | EM3DR |
| EMDB-5392 | 9.1 | FSC 0.5 | WHOLE FILM/CCD | Spider, EMAN | |
| PDB-2rdo | 9.1 | 3D MAPS by WIENER FILTER | projection matching | ||
| PDB-3iyi | 9.1 | FSC 0.5 | ROBEM | iterative model-based procedure | AUTO3DEM |
| EMDB-1385 | 9.2 | FSC 0.5 | EACH PARTICLE | common line | Multi-path SA |
| EMDB-1386 | 9.2 | FSC 0.5 | EACH PARTICLE | common line | Multi-path SA |
| EMDB-1715 | 9.2 | FSC 0.5 | EACH FILM/CCD | common line | MPSA |
| EMDB-1948 | 9.2 | FSC 0.5 | EACH PARTICLE corrected using bsoft | PFT | EM3DR |
| EMDB-2326 | 9.2 | Gold-standard FSC 0.143 | EACH FILM/CCD | Fourier | EMAN |
| EMDB-5315 | 9.2 | FSC 0.5 | WHOLE FILM/CCD | projection matching | EMAN, SPARX |
| EMDB-5370 | 9.2 | FSC 0.5 | |||
| EMDB-5399 | 9.2 | FSC 0.5 | WHOLE FILM/CCD | Spider, EMAN | |
| EMDB-5466 | 9.2 | FSC 0.5 | auto3DEM | common line | EMAN, auto3DEM |
| PDB-3j23 | 9.2 | FSC 0.5 | auto3DEM | common line | EMAN, auto3DEM |
| EMDB-1178 | 9.3 | FSC 0.33 | EACH FILM/CCD or each focal pair | POLAR FOURIER TRANSFORM | PFT, EM3DR, PFT2, EM3DR |
| EMDB-2112 | 9.3 | FSC 0.143 | WHOLE FILM/CCD | projection matching | Frealign |
| EMDB-5194 | 9.3 | FSC 0.5 is 9.3 Angstroms but Fourier layerlines extend to better than 9 Armstrong | EACH FILM/CCD | SPIDER | |
| EMDB-5426 | 9.3 | FSC 0.5 | Each image | projection matching | EMAN |
| PDB-2c9g | 9.3 | AMPLITUDE AND PHASE | POLAR FOURIER TRANSFORM, FOURIER BESSELRECONSTRUCTION | ||
| EMDB-1417 | 9.4 | FSC 0.5 | EACH FILM/CCD | projection matching procedure | SPIDER |
| EMDB-1604 | 9.4 | FSC 0.5 | PHASE FLIP, Wiener | Helical processing | Ruby-Helix |
| EMDB-1812 | 9.4 | FSC 0.5 | on the level of 3D volumes (SPIDER TF CTS command) | projection matching | SPIDER |
| EMDB-1894 | 9.4 | FSC 0.5 | PHASE FLIP > EACH FILM/CCD | projection matching | Imagic |
| EMDB-5051 | 9.4 | Frealign at 0.5 | EACH PARTICLE with EMAN | projection matching | EMAN, SPIDER |
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