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Showing 1 - 50 of 293 items for (author: sumi & t)

EMDB-38372:
SARS-CoV-2 Omicron BQ.1.1 Variant Spike Protein Complexed with MO11 Fab
Method: single particle / : Ishimaru H, Nishimura M, Shigematsu H, Marini MI, Hasegawa N, Takamiya R, Iwata S, Mori Y

PDB-8xi6:
SARS-CoV-2 Omicron BQ.1.1 Variant Spike Protein Complexed with MO11 Fab
Method: single particle / : Ishimaru H, Nishimura M, Shigematsu H, Marini MI, Hasegawa N, Takamiya R, Iwata S, Mori Y

EMDB-41711:
Disulfide-stabilized HIV-1 CA hexamer in complex with PQBP1 Nt
Method: single particle / : Piacentini J, Pornillos O, Ganser-Pornillos BK

PDB-8ty6:
Disulfide-stabilized HIV-1 CA hexamer in complex with PQBP1 Nt
Method: single particle / : Piacentini J, Pornillos O, Ganser-Pornillos BK

EMDB-41217:
Wildtype rabbit TRPV5 into nanodiscs in Apo state
Method: single particle / : De Jesus-Perez JJ, Fluck EC, Moiseenkova-Bell VY

EMDB-41218:
Wildtype rabbit TRPV5 into nanodiscs in complex with econazole
Method: single particle / : De Jesus-Perez JJ, Fluck EC, Moiseenkova-Bell VY

EMDB-41219:
Wildtype rabbit TRPV5 into nanodiscs in the presence of PI(4,5)P2 and econazole
Method: single particle / : De Jesus-Perez JJ, Fluck EC, Moiseenkova-Bell VY

PDB-8tf2:
Wildtype rabbit TRPV5 into nanodiscs in Apo state
Method: single particle / : De Jesus-Perez JJ, Fluck EC, Moiseenkova-Bell VY

PDB-8tf3:
Wildtype rabbit TRPV5 into nanodiscs in complex with econazole
Method: single particle / : De Jesus-Perez JJ, Fluck EC, Moiseenkova-Bell VY

PDB-8tf4:
Wildtype rabbit TRPV5 into nanodiscs in the presence of PI(4,5)P2 and econazole
Method: single particle / : De Jesus-Perez JJ, Fluck EC, Moiseenkova-Bell VY

EMDB-36251:
RNA polymerase II elongation complex bound with Elf1, Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

EMDB-36252:
RNA polymerase II elongation complex containing 40 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

EMDB-36253:
RNA polymerase II elongation complex containing 60 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

EMDB-37848:
RNA polymerase II elongation complex bound with Elf1, Spt4/5 and foreign DNA, stalled at SHL(0) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

PDB-8jh2:
RNA polymerase II elongation complex bound with Elf1, Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

PDB-8jh3:
RNA polymerase II elongation complex containing 40 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

PDB-8jh4:
RNA polymerase II elongation complex containing 60 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

EMDB-34741:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-11
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Someya T, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

EMDB-34742:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-11 focused on RBD and NIV-11 interface
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Someya T, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

PDB-8hgl:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-11
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Someya T, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

PDB-8hgm:
Structure of SARS-CoV-2 spike RBD in complex with neutralizing antibody NIV-11
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Someya T, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

EMDB-41284:
Combined linker domain of N-DRC and associated proteins Tetrahymena
Method: single particle / : Ghanaeian AG, Majhi SM, McCaffrey CM, Nami BN, Black CB, Yang SK, Legal TL, Papoulas OP, Janowska MJ, Valente-Paterno MV, Marcotte EM, Wloga DW, Bui KH

PDB-8tid:
Combined linker domain of N-DRC and associated proteins Tetrahymena
Method: single particle / : Ghanaeian AG, Majhi SM, McCaffrey CM, Nami BN, Black CB, Yang SK, Legal TL, Papoulas OP, Janowska MJ, Valente-Paterno MV, Marcotte EM, Wloga DW, Bui KH

EMDB-41189:
Baseplate of Nexin-dynein regulatory complex from Tetrahymena thermophila
Method: single particle / : Ghanaeian AG, Black CS, Yang SK, Bui KH

EMDB-41251:
Linker domain of Nexin-dynein regulatory complex from Tetrahymena thermophila
Method: single particle / : Ghanaeian AG, Bui KH

EMDB-41270:
Focused refinement of the N-DRC from the Tetrahymena WT subtomo
Method: subtomogram averaging / : Ghanaeian AG, Majhi SM, McCaffrey CM, Nami BN, Black CB, Yang SK, Legal TL, Papoulas OP, Janowska MJ, Valente-Paterno MV, Marcotte EM, Wloga DW, Bui KH

EMDB-41375:
Linker domain of N-DRC complex from Tetrahymena thermophila
Method: single particle / : Ghanaeian AG, Bui KH

EMDB-41376:
96nm repeat of Doublet microtubule from Tetrahymena thermophila
Method: single particle / : Ghanaeian AG, Bui KH

EMDB-41504:
DRC9/10 baseplate from Tetrahymena thermophila
Method: single particle / : Ghanaeian AG, Bui KH

PDB-8tek:
Baseplate of Nexin-dynein regulatory complex from Tetrahymena thermophila
Method: single particle / : Ghanaeian AG, Black CS, Yang SK, Bui KH

PDB-8th8:
Linker domain of Nexin-dynein regulatory complex from Tetrahymena thermophila
Method: single particle / : Ghanaeian AG, Bui KH

EMDB-36048:
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36049:
Cryo-EM structure of hZnT7-Fab complex in zinc-bound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36050:
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in heterogeneous conformations- one subunit in an inward-facing and the other in an outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36051:
Cryo-EM structure of hZnT7-Fab complex in zinc state 2, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-bound conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36052:
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-unbound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36053:
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-bound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36055:
Cryo-EM structure of hZnT7-Fab complex in zinc state 1, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-unbound conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7t:
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7u:
Cryo-EM structure of hZnT7-Fab complex in zinc-bound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7v:
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in heterogeneous conformations- one subunit in an inward-facing and the other in an outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7w:
Cryo-EM structure of hZnT7-Fab complex in zinc state 2, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-bound conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7x:
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-unbound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7y:
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-bound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j80:
Cryo-EM structure of hZnT7-Fab complex in zinc state 1, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-unbound conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-29644:
Structure of signaling thrombopoietin-MPL receptor complex
Method: single particle / : Tsutsumi N, Jude KM, Gati C, Garcia KC

PDB-8g04:
Structure of signaling thrombopoietin-MPL receptor complex
Method: single particle / : Tsutsumi N, Jude KM, Gati C, Garcia KC

EMDB-33820:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-8 focused on RBD and NIV-8 interface
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Someya T, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

EMDB-33821:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-8 (state 1)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

EMDB-33822:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-8 (state 2)
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Someya T, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

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