[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 108 items for (author: spence & j)

EMDB-18207:
Ubiquitin ligation to substrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB-Sil1 peptide, Glacios map
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-18230:
Ubiquitin ligation to substrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB-Sil1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-18915:
Ubiquitin ligation to neosubstrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-VHL-MZ1 with trapped UBE2R2~donor UB-BRD4 BD2
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

PDB-8q7r:
Ubiquitin ligation to substrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB-Sil1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

PDB-8r5h:
Ubiquitin ligation to neosubstrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-VHL-MZ1 with trapped UBE2R2~donor UB-BRD4 BD2
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-16433:
Cryo-EM structure of NADH bound SLA dehydrogenase RlGabD from Rhizobium leguminosarum bv. trifolii SRD1565
Method: single particle / : Sharma M, Meek RW, Armstrong Z, Blaza JN, Alhifthi A, Li J, Goddard-Borger ED, Williams SJ, Davies GJ

PDB-8c54:
Cryo-EM structure of NADH bound SLA dehydrogenase RlGabD from Rhizobium leguminosarum bv. trifolii SRD1565
Method: single particle / : Sharma M, Meek RW, Armstrong Z, Blaza JN, Alhifthi A, Li J, Goddard-Borger ED, Williams SJ, Davies GJ

EMDB-16144:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the macrocyclic peptide S1B3inL1
Method: single particle / : Hurdiss DL, Drulyte I

PDB-8bon:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the macrocyclic peptide S1B3inL1
Method: single particle / : Hurdiss DL

EMDB-40422:
Cryo-EM Structure of RyR1
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40423:
Cryo-EM Structure of RyR1 + ATP-gamma-S
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40424:
Cryo-EM Structure of RyR1 + ADP
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40425:
Cryo-EM Structure of RyR1 + AMP
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40426:
Cryo-EM Structure of RyR1 + Adenosine
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40427:
Cryo-EM Structure of RyR1 + Adenine
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40428:
Cryo-EM Structure of RyR1 + cAMP
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40429:
Cryo-EM Structure of RyR1 (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40430:
Cryo-EM Structure of RyR1 + ATP-gamma-S (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40431:
Cryo-EM Structure of RyR1 + ADP (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40432:
Cryo-EM Structure of RyR1 + AMP (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40433:
Cryo-EM Structure of RyR1 + Adenosine (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40434:
Cryo-EM Structure of RyR1 + Adenine (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40435:
Cryo-EM Structure of RyR1 + cAMP (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

PDB-8sen:
Cryo-EM Structure of RyR1
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

PDB-8seo:
Cryo-EM Structure of RyR1 + ATP-gamma-S
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

PDB-8sep:
Cryo-EM Structure of RyR1 + ADP
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

PDB-8seq:
Cryo-EM Structure of RyR1 + AMP
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

PDB-8ser:
Cryo-EM Structure of RyR1 + Adenosine
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

PDB-8ses:
Cryo-EM Structure of RyR1 + Adenine
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

PDB-8set:
Cryo-EM Structure of RyR1 + cAMP
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

PDB-8seu:
Cryo-EM Structure of RyR1 (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

PDB-8sev:
Cryo-EM Structure of RyR1 + ATP-gamma-S (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

PDB-8sew:
Cryo-EM Structure of RyR1 + ADP (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

PDB-8sex:
Cryo-EM Structure of RyR1 + AMP (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

PDB-8sey:
Cryo-EM Structure of RyR1 + Adenosine (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

PDB-8sez:
Cryo-EM Structure of RyR1 + Adenine (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

PDB-8sf0:
Cryo-EM Structure of RyR1 + cAMP (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-16403:
Subtomogram averaging of a coronavirus spike (ChAdOx1 19E6) in C3 symmetry
Method: subtomogram averaging / : Ni T, Mendonca L, Zhu Y, Zhang P

EMDB-16404:
Subtomogram averaging of a coronavirus spike (ChAdOx1 19E6) in C1 symmetry
Method: subtomogram averaging / : Ni T, Mendonca L, Zhu Y, Zhang P

EMDB-16405:
Subtomogram averaging of a coronavirus spike (ChAdOx1 19E) in C3 symmetry
Method: subtomogram averaging / : Ni T, Mendonca L, Zhu Y, Zhang P

EMDB-16406:
Subtomogram averaging of a coronavirus spike in situ (ChAdOx1 19E) in C1 symmetry
Method: subtomogram averaging / : Ni T, Mendonca L, Zhu Y, Zhang P

EMDB-16697:
Subtomogram averaging of a coronavirus spike (ChAdOx1 19E6) in C1 symmetry after 3D classification
Method: subtomogram averaging / : Ni T, Mendonca L, Zhu Y, Zhang P

EMDB-26983:
1F8 mAb in complex with the computationally optimized broadly reactive H1 influenza hemagglutinin P1
Method: single particle / : Dzimianski JV, DuBois RM, Ward A

PDB-8ct6:
1F8 mAb in complex with the computationally optimized broadly reactive H1 influenza hemagglutinin P1
Method: single particle / : Dzimianski JV, DuBois RM

EMDB-27973:
Erwinia amylovora 70S Ribosome
Method: subtomogram averaging / : Laughlin TG, Villa E

EMDB-28003:
Erwinia phage vB_EamM_RAY (RAY) Capsid Vertex
Method: subtomogram averaging / : Laughlin TG, Villa E

EMDB-28004:
Erwinia phage vB_EamM_RAY (RAY) Capsid Collar
Method: subtomogram averaging / : Laughlin TG, Villa E

EMDB-28005:
Erwinia phage vB_EamM_RAY (RAY) Tail Sheath
Method: subtomogram averaging / : Laughlin TG, Villa E

EMDB-28006:
Erwinia phage vB_EamM_RAY (RAY) Baseplate
Method: subtomogram averaging / : Laughlin TG, Villa E

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more