[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 62 items for (author: samso & m)

EMDB-17993:
Atomic structure and conformational variability of the HER2-Trastuzumab-Pertuzumab complex
Method: single particle / : Ruedas R, Vuillemot R, Tubiana T, Winter JM, Pieri L, Arteni AA, Samson C, Jonic J, Mathieu M, Bressanelli S

PDB-8pwh:
Atomic structure and conformational variability of the HER2-Trastuzumab-Pertuzumab complex
Method: single particle / : Ruedas R, Vuillemot R, Tubiana T, Winter JM, Pieri L, Arteni AA, Samson C, Jonic J, Mathieu M, Bressanelli S

EMDB-27712:
Recombinant mouse RyR2 triple phosphonull mutant S2807A/S2813A/S2030A in complex with FKBP12.6 and nanodisc under closed-state conditions
Method: single particle / : Iyer KA, Hu Y, Murayama T, Samso M

PDB-8dtz:
Recombinant mouse RyR2 triple phosphonull mutant S2807A/S2813A/S2030A in complex with FKBP12.6 and nanodisc under closed-state conditions
Method: single particle / : Iyer KA, Hu Y, Murayama T, Samso M

EMDB-27711:
Recombinant mouse RyR2 triple phosphomimetic mutant S2807D/S2813D/S2030D in complex with FKBP12.6 and nanodisc under closed-state conditions
Method: single particle / : Iyer KA, Hu Y, Murayama T, Samso M

PDB-8dty:
Recombinant mouse RyR2 triple phosphomimetic mutant S2807D/S2813D/S2030D in complex with FKBP12.6 and nanodisc under closed-state conditions
Method: single particle / : Iyer KA, Hu Y, Murayama T, Samso M

EMDB-27746:
Recombinant mouse RyR2 triple phosphomimetic mutant S2807D/S2813D/S2030D in complex with FKBP12.6 and nanodisc under open-state conditions
Method: single particle / : Iyer KA, Hu Y, Murayama T, Samso M

PDB-8dvv:
Recombinant mouse RyR2 triple phosphomimetic mutant S2807D/S2813D/S2030D in complex with FKBP12.6 and nanodisc under open-state conditions
Method: single particle / : Iyer KA, Hu Y, Murayama T, Samso M

EMDB-18188:
Atomic structure and conformational variability of the HER2-Trastuzumab-Pertuzumab complex
Method: single particle / : Ruedas R, Vuillemot R, Tubiana T, Winter JM, Pieri L, Arteni AA, Samson C, Jonic J, Mathieu M, Bressanelli S

PDB-8q6j:
Atomic structure and conformational variability of the HER2-Trastuzumab-Pertuzumab complex
Method: single particle / : Ruedas R, Vuillemot R, Tubiana T, Winter JM, Pieri L, Arteni AA, Samson C, Jonic J, Mathieu M, Bressanelli S

EMDB-18189:
Cryo-EM map of the pertuzumab-HER2 complex obtained from local refinement of the HER2-pertuzumab-trastuzumab ternary complex
Method: single particle / : Ruedas R, Bressanelli S

EMDB-18190:
Cryo-EM map of the trastuzumab-HER2 complex obtained from local refinement of the HER2-pertuzumab-trastuzumab ternary complex
Method: single particle / : Ruedas R, Bressanelli S

EMDB-26610:
Cryo-EM structure of rabbit RyR1 in the presence of high Mg2+ and AMP-PCP in nanodisc
Method: single particle / : Nayak AR, Samso M

PDB-7umz:
Cryo-EM structure of rabbit RyR1 in the presence of high Mg2+ and AMP-PCP in nanodisc
Method: single particle / : Nayak AR, Samso M

EMDB-27795:
Cryo-EM structure of bundle-forming pilus extension ATPase from E. coli in the presence of AMP-PNP (class-1)
Method: single particle / : Nayak AR, Zhao J, Donnenberg MS, Samso M

EMDB-27796:
Cryo-EM structure of bundle-forming pilus extension ATPase from E.coli in the presence of AMP-PNP (class-2)
Method: single particle / : Nayak AR, Zhao J, Donnenberg MS, Samso M

EMDB-27797:
Cryo-EM structure of bundle-forming pilus extension ATPase from E.coli in the presence of ADP
Method: single particle / : Nayak AR, Zhao J, Donnenberg MS, Samso M

PDB-8dze:
Cryo-EM structure of bundle-forming pilus extension ATPase from E. coli in the presence of AMP-PNP (class-1)
Method: single particle / : Nayak AR, Zhao J, Donnenberg MS, Samso M

PDB-8dzf:
Cryo-EM structure of bundle-forming pilus extension ATPase from E.coli in the presence of AMP-PNP (class-2)
Method: single particle / : Nayak AR, Zhao J, Donnenberg MS, Samso M

PDB-8dzg:
Cryo-EM structure of bundle-forming pilus extension ATPase from E.coli in the presence of ADP
Method: single particle / : Nayak AR, Zhao J, Donnenberg MS, Samso M

EMDB-25709:
Rabbit RyR1 disease mutant Y523S in complex with FKBP12.6 embedded in lipidic nanodisc in the closed state
Method: single particle / : Iyer KA, Hu Y, Murayama T, Samso M

EMDB-25710:
Rabbit RyR1 disease mutant Y523S in complex with FKBP12.6 embedded in lipidic nanodisc in the open state
Method: single particle / : Iyer KA, Hu Y, Murayama T, Samso M

PDB-7t64:
Rabbit RyR1 disease mutant Y523S in complex with FKBP12.6 embedded in lipidic nanodisc in the closed state
Method: single particle / : Iyer KA, Hu Y, Murayama T, Samso M

PDB-7t65:
Rabbit RyR1 disease mutant Y523S in complex with FKBP12.6 embedded in lipidic nanodisc in the open state
Method: single particle / : Iyer KA, Hu Y, Murayama T, Samso M

EMDB-32629:
Structure and dynamics of Odinarchaeota tubulin and the implications for eukaryotic microtubule evolution
Method: helical / : Akil C, Ali S, Tran LT

EMDB-32630:
Structure and dynamics of Odinarchaeota tubulin and the implications for eukaryotic microtubule evolution
Method: helical / : Akil C, Ali S, Tran LT

EMDB-25828:
Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in inactivated conformation (Dataset-A)
Method: single particle / : Nayak AR, Samso M

EMDB-25829:
Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in open conformation
Method: single particle / : Nayak AR, Samso M

EMDB-25830:
Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in closed-inactivated conformation class 2 (Dataset-A)
Method: single particle / : Nayak AR, Samso M

EMDB-25831:
Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in closed-inactivated conformation class 1(Dataset-A)
Method: single particle / : Nayak AR, Samso M

EMDB-25832:
Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in closed-inactivated conformation class 3 (Dataset-A)
Method: single particle / : Nayak AR, Samso M

EMDB-25833:
Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in inactivated conformation (Dataset-B)
Method: single particle / : Nayak AR, Samso M

PDB-7tdg:
Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in inactivated conformation (Dataset-A)
Method: single particle / : Nayak AR, Samso M

PDB-7tdh:
Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in open conformation
Method: single particle / : Nayak AR, Samso M

PDB-7tdi:
Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in closed-inactivated conformation class 2 (Dataset-A)
Method: single particle / : Nayak AR, Samso M

PDB-7tdj:
Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in closed-inactivated conformation class 1(Dataset-A)
Method: single particle / : Nayak AR, Samso M

PDB-7tdk:
Rabbit RyR1 with AMP-PCP and high Ca2+ embedded in nanodisc in closed-inactivated conformation class 3 (Dataset-A)
Method: single particle / : Nayak AR, Samso M

EMDB-22597:
Focused cryo-EM map of rabbit RyR1 central and transmembrane domains in the presence of AMP-PCP in nanodisc
Method: single particle / : Nayak AR, Samso M

EMDB-22616:
Cryo-EM structure of rabbit RyR1 in the presence of AMP-PCP in nanodisc
Method: single particle / : Nayak AR, Samso M

PDB-7k0t:
Cryo-EM structure of rabbit RyR1 in the presence of AMP-PCP in nanodisc
Method: single particle / : Nayak AR, Samso M

EMDB-22615:
Cryo-EM structure of rabbit RyR1 in the presence of Mg2+ and AMP-PCP in nanodisc
Method: single particle / : Nayak AR, Samso M

PDB-7k0s:
Cryo-EM structure of rabbit RyR1 in the presence of Mg2+ and AMP-PCP in nanodisc
Method: single particle / : Nayak AR, Samso M

EMDB-22596:
Focused cryo-EM map of rabbit RyR1 central and transmembrane domains in the presence of Mg2+ and AMP-PCP in nanodisc
Method: single particle / : Nayak AR, Samso M

EMDB-30384:
Simplified Alpha-Carboxysome, T=3
Method: single particle / : Tan YQ, Ali S

EMDB-30385:
Simplified Alpha-Carboxysome, T=4
Method: single particle / : Tan YQ, Ali S

PDB-7ckb:
Simplified Alpha-Carboxysome, T=3
Method: single particle / : Tan YQ, Ali S, Xue B, Robinson RC, Narita A, Yew WS

PDB-7ckc:
Simplified Alpha-Carboxysome, T=4
Method: single particle / : Tan YQ, Ali S, Xue B, Robinson RC, Narita A, Yew WS

EMDB-21860:
Cryo-EM structure of recombinant rabbit Ryanodine Receptor type 1 mutant R164C in complex with FKBP12.6
Method: single particle / : Iyer KA, Hu Y, Kurebayashi N, Murayama T, Samso M

EMDB-21861:
Cryo-EM structure of recombinant mouse Ryanodine Receptor type 2 mutant R176Q in complex with FKBP12.6 in nanodisc
Method: single particle / : Iyer KA, Hu Y, Kurebayashi N, Murayama T, Samso M

EMDB-21862:
Cryo-EM structure of recombinant mouse Ryanodine Receptor type 2 wild type in complex with FKBP12.6
Method: single particle / : Iyer KA, Hu Y, Nayak AR, Kurebayashi N, Murayama T, Samso M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more