[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 48 items for (author: mason & rd)

EMDB-27735:
Cryo-EM structure of SIVmac239 SOS-2P Env trimer in complex with human bNAb PGT145
Method: single particle / : Gorman J, Kwong PD

PDB-8dvd:
Cryo-EM structure of SIVmac239 SOS-2P Env trimer in complex with human bNAb PGT145
Method: single particle / : Gorman J, Kwong PD

EMDB-27718:
SIV E660.CR54 SOS-2P Env Trimer with ITS92.02
Method: single particle / : Gorman J, Kwong PD

PDB-8dua:
SIV E660.CR54 SOS-2P Env Trimer with ITS92.02
Method: single particle / : Gorman J, Kwong PD

EMDB-25062:
In-situ structure of SIV trimer
Method: subtomogram averaging / : Gorman J, Wang CY, Mason RD, Nazzari AF, Welles H, Zhou TQ, Jr JB, Tsybovsky Y, Verardi R, Yang YP, Zhang BS, Lifson JD, Liu J, Roederer M, Kwong PD

EMDB-25063:
in situ SIVmac239-Env trimers on the surface of AT-2-inactivated virions
Method: subtomogram averaging / : Liu J, Wang CY

EMDB-25064:
in situ SIVmac239-Env trimers on the surface of AT-2-inactivated virions
Method: subtomogram averaging / : Liu J, Wang CY

EMDB-25065:
In-situ structure of SIVmac239-Env trimers with ITS90.03 associated
Method: subtomogram averaging / : Liu J, Wang CY

EMDB-27631:
SIV mac239 SOS-2P K169T Env trimer with bNAb PGT145 and jacalin
Method: single particle / : Gorman J, Kwong PD

EMDB-25792:
Cryo-EM structure of the spike of SARS-CoV-2 Omicron variant of concern
Method: single particle / : Zhou T, Tsybovsky T, Kwong PD

PDB-7tb4:
Cryo-EM structure of the spike of SARS-CoV-2 Omicron variant of concern
Method: single particle / : Zhou T, Tsybovsky T, Kwong PD

EMDB-23914:
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody B1-182.1 that targets the receptor-binding domain
Method: single particle / : Zhou T, Tsybovsky T, Kwong PD

EMDB-23915:
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody B1-182.1 that targets the receptor-binding domain
Method: single particle / : Zhou T, Tsybovsky T, Kwong PD

PDB-7mlz:
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody B1-182.1 that targets the receptor-binding domain
Method: single particle / : Zhou T, Tsybovsky T, Kwong PD

PDB-7mm0:
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody B1-182.1 that targets the receptor-binding domain
Method: single particle / : Zhou T, Tsybovsky T, Kwong PD

EMDB-23498:
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody A23-58.1 that targets the receptor-binding domain
Method: single particle / : Zhou T, Tsybovsky Y

EMDB-23499:
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody A23-58.1 that targets the receptor-binding domain
Method: single particle / : Zhou T, Tsybovsky T

PDB-7lrs:
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody A23-58.1 that targets the receptor-binding domain
Method: single particle / : Zhou T, Tsybovsky Y

PDB-7lrt:
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody A23-58.1 that targets the receptor-binding domain
Method: single particle / : Zhou T, Tsybovsky T

EMDB-22295:
Cryo-EM structure of SHIV-elicited RHA1.V2.01 in complex with HIV-1 Env BG505 DS-SOSIP.664
Method: single particle / : Gorman J, Kwong PD

PDB-6xrt:
Cryo-EM structure of SHIV-elicited RHA1.V2.01 in complex with HIV-1 Env BG505 DS-SOSIP.664
Method: single particle / : Gorman J, Kwong PD

EMDB-22372:
RhBZ05.1 Fab in complex with BG505 SOSIP.664
Method: single particle / : Cottrell CA, Nogal B, Ward AB

EMDB-22373:
RhBZ31.1 Fab in complex with BG505 SOSIP.664
Method: single particle / : Cottrell CA, Nogal B, Ward AB

EMDB-22374:
RhBZ31.2 Fab in complex with BG505 SOSIP.664
Method: single particle / : Cottrell CA, Nogal B, Ward AB

EMDB-22385:
Rh137.3 monoclonal complexed with BG505v3 trimer
Method: single particle / : Nogal B, Cottrell CA, Ward AB

EMDB-22387:
Monoclonal Rh046.7 from animal 12-046
Method: single particle / : Nogal B, Cottrell CA, Ward AB

EMDB-22388:
Monoclonal Rh046.7 from animal 12-046
Method: single particle / : Nogal B, Cottrell CA, Ward AB

EMDB-8977:
Cryo-EM structure at 3.2 A resolution of HIV-1 fusion peptide-directed antibody, A12V163-b.01, elicited by vaccination of Rhesus macaques, in complex with stabilized HIV-1 Env BG505 DS-SOSIP, which was also bound to antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Eng ET, Kwong PD

EMDB-20191:
Cryo-EM structure of vaccine-elicited antibody 0PV-b.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122
Method: single particle / : Gorman J, Kwong PD

PDB-6ot1:
Cryo-EM structure of vaccine-elicited antibody 0PV-b.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122
Method: single particle / : Gorman J, Kwong PD

EMDB-20189:
Cryo-EM structure of vaccine-elicited antibody 0PV-a.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122
Method: single particle / : Gorman J, Kwong PD

EMDB-9189:
Cryo-EM structure at 3.8 A resolution of HIV-1 fusion peptide-directed antibody, DF1W-a.01, elicited by vaccination of Rhesus macaques, in complex with stabilized HIV-1 Env BG505 DS-SOSIP, which was also bound to antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Xu K, Kwong PD

EMDB-9319:
Cryo-EM structure at 4.0 A resolution of vaccine-elicited antibody A12V163-a.01 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Kwong PD

EMDB-9320:
Cryo-EM structure at 4.2 A resolution of vaccine-elicited antibody DFPH-a.15 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Kwong PD

EMDB-9359:
Cryo-EM structure of vaccine-elicited antibody 0PV-c.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122
Method: single particle / : Gorman J, Kwong PD

PDB-6mpg:
Cryo-EM structure at 3.2 A resolution of HIV-1 fusion peptide-directed antibody, A12V163-b.01, elicited by vaccination of Rhesus macaques, in complex with stabilized HIV-1 Env BG505 DS-SOSIP, which was also bound to antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Kwong PD

PDB-6mph:
Cryo-EM structure at 3.8 A resolution of HIV-1 fusion peptide-directed antibody, DF1W-a.01, elicited by vaccination of Rhesus macaques, in complex with stabilized HIV-1 Env BG505 DS-SOSIP, which was also bound to antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Xu K, Kwong PD

PDB-6n1v:
Cryo-EM structure at 4.0 A resolution of vaccine-elicited antibody A12V163-a.01 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Kwong PD

PDB-6n1w:
Cryo-EM structure at 4.2 A resolution of vaccine-elicited antibody DFPH-a.15 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122
Method: single particle / : Acharya P, Kwong PD

PDB-6nf2:
Cryo-EM structure of vaccine-elicited antibody 0PV-c.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122
Method: single particle / : Gorman J, Kwong PD

PDB-6osy:
Cryo-EM structure of vaccine-elicited antibody 0PV-a.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122
Method: single particle / : Gorman J, Kwong PD

EMDB-7900:
REGN3479 antibody Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Ward AB

EMDB-7901:
REGN3470 antibody Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Ward AB

EMDB-7902:
REGN3471 antibody Fab in complex with Ebola virus GP
Method: single particle / : Turner H, Murin CD, Ward AB

EMDB-7125:
Recombinant major vault protein [Rattus norvegicus] structure in solution: conformation 2
Method: single particle / : Ding K, Zhang X

EMDB-7126:
Recombinant major vault protein [Rattus norvegicus] structure in solution: conformation 1
Method: single particle / : Ding K, Zhang X

PDB-6bp7:
Recombinant major vault protein [Rattus norvegicus] structure in solution: conformation 2
Method: single particle / : Ding K, Zhang X, Mrazek J, Kickhoefer VA, Lai M, Ng HL, Yang OO, Rome LH, Zhou ZH

PDB-6bp8:
Recombinant major vault protein [Rattus norvegicus] structure in solution: conformation 1
Method: single particle / : Ding K, Zhang X, Mrazek J, Kickhoefer VA, Lai M, Ng HL, Yang OO, Rome LH, Zhou ZH

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more