[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 226 items for (author: he & yj)

EMDB-34609:
NARROW LEAF 1 from Indica
Method: single particle / : Zhang SJ, He YJ, Wang N, Zhang WJ, Liu CM

EMDB-41639:
Langya henipavirus fusion protein in postfusion state
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-41640:
Langya henipavirus fusion protein in prefusion state
Method: single particle / : Wang Z, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-41641:
Langya henipavirus postfusion F protein in complex with the 4G5 Fab, local refinement of the viral membrane distal region
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-41642:
Langya henipavirus postfusion F protein in complex with 4G5 Fab, local refinement of the viral membrane proximal region
Method: single particle / : Wang Z, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-41644:
Langya henipavirus postfusion fusion protein in complex with 4G5 Fab (global refinement)
Method: single particle / : Wang Z, Veesler D

EMDB-37663:
CryoEM structure of ZIKV rsNS1
Method: single particle / : Chew BLA, Luo D

EMDB-37670:
ZIKV rsNS1 in complex with Fab AA12 and anti-fab nanobody
Method: single particle / : Chew BLA, Luo D

EMDB-37673:
ZIKV rsNS1 in complex with Fab GB5 and anti-fab nanobody
Method: single particle / : Chew BLA, Luo D

EMDB-37676:
CryoEM structure of ZIKV rsNS1 filament
Method: helical / : Chew BLA, Luo D

EMDB-37678:
ZIKV rsNS1 in complex with Fab EB9 and anti-fab nanobody
Method: single particle / : Chew BLA, Luo D

EMDB-36732:
Cryo-EM structure of the gasdermin pore from Trichoplax adhaerens
Method: single particle / : Hou YJ, Sun Q, Zeng H, Ding J

EMDB-36733:
Cryo-EM structure of the gasdermin pore from Trichoplax adhaerens
Method: single particle / : Hou YJ, Sun Q, Zeng H, Ding J

EMDB-36734:
Cryo-EM structure of RCD-1 pore from Neurospora crassa
Method: single particle / : Hou YJ, Sun Q, Li Y, Ding J

EMDB-41636:
Ghanaian virus fusion glycoprotein (GhV F)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-41643:
Langya Virus G glycoprotein (LayV G) with stabilizing mutations
Method: single particle / : McCallum M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-43593:
Langya Virus attachment (G) glycoprotein with K85L/L86K mutation
Method: single particle / : Gibson CG, McCallum MM, Veesler DV

EMDB-34607:
NARROW LEAF 1-close from Japonica
Method: single particle / : Zhang SJ, He YJ, Wang N, Zhang WJ, Liu CM

EMDB-43737:
Umb1 umbrella toxin particle (local refinement of UmbB1 bound ALF of UmbC1 and UmbA1)
Method: single particle / : Park YJ, Zhao Q, Seattle Structural Genomics Center for Infectious Disease (SSGCID), DiMaio F, Mougous JD, Veesler D

EMDB-36202:
Cryo-EM structure of alpha-synuclein gS87 fibril
Method: helical / : Xia WC, Sun YP, Liu C, Tao YQ

EMDB-36203:
Cryo-EM structure of alpha-synuclein pS87 fibril
Method: helical / : Xia WC, Sun YP, Liu C, Tao YQ

EMDB-35514:
Cryo-EM structure of the inactive CD97
Method: single particle / : Mao C, Zhao R, Dong Y, Gao M, Chen L, Zhang C, Xiao P, Guo J, Qin J, Shen D, Ji S, Zang S, Zhang H, Wang W, Shen Q, Sun P, Zhang Y

EMDB-38938:
Cryo-EM structure of the inactive CD97
Method: single particle / : Mao C, Zhao R, Dong Y, Gao M, Chen L, Zhang C, Xiao P, Guo J, Qin J, Shen D, Ji S, Zang S, Zhang H, Wang W, Shen Q, Sun P, Zhang Y

EMDB-38939:
Cryo-EM structure of the inactive CD97
Method: single particle / : Mao C, Zhao R, Dong Y, Gao M, Chen L, Zhang C, Xiao P, Guo J, Qin J, Shen D, Ji S, Zang S, Zhang H, Wang W, Shen Q, Sun P, Zhang Y

EMDB-38980:
Cryo-EM structure of the inactive CD97
Method: single particle / : Mao C, Zhao R, Dong Y, Gao M, Chen L, Zhang C, Xiao P, Guo J, Qin J, Shen D, Ji S, Zang S, Zhang H, Wang W, Shen Q, Sun J, Zhang Y

EMDB-35516:
Cryo-EM structure of the CD97-G13 complex
Method: single particle / : Mao C, Zhao R, Dong Y, Gao M, Chen L, Zhang C, Xiao P

EMDB-42481:
I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-1heptad-I53_dn5
Method: single particle / : Park YJ, Veesler D

EMDB-42482:
I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-1heptad-I53_dn5 (local refinement of TH-1heptad)
Method: single particle / : Park YJ, Veesler D

EMDB-42483:
I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-2heptad-I53_dn5
Method: single particle / : Park YJ, Veesler D

EMDB-42485:
I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-6heptad-I53_dn5
Method: single particle / : Park YJ, Veesler D

EMDB-42486:
I53_dn5 nanoparticle displaying the trimeric HA heads with heptad domain, TH-6heptad-I53_dn5 (local refinement of TH-6heptad)
Method: single particle / : Park YJ, Veesler D

EMDB-41784:
PRD-0038 RBD bound to Rhinolophus alcyone ACE2 (local refinement)
Method: single particle / : Park YJ, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-41786:
PRD-0038 RBD bound to R. alcyone ACE2
Method: single particle / : Park YJ, Veesler D

EMDB-41842:
Prefusion structure of the PRD-0038 spike glycoprotein ectodomain trimer
Method: single particle / : Lee J, Park YJ, Veesler D

EMDB-41843:
PRD-0038 Spike glycoprotein NTD
Method: single particle / : Lee J, Park YJ, Veesler D

EMDB-40699:
SARS-CoV-2 replication-transcription complex bound to nsp9 and UMPCPP, as a pre-catalytic NMPylation intermediate
Method: single particle / : Small GI, Darst SA, Campbell EA

EMDB-40707:
SARS-CoV-2 replication-transcription complex bound to RNA-nsp9, as a noncatalytic RNA-nsp9 binding mode
Method: single particle / : Small GI, Darst SA, Campbell EA

EMDB-40708:
SARS-CoV-2 replication-transcription complex bound to RNA-nsp9 and GDP-betaS, as a pre-catalytic deRNAylation/mRNA capping intermediate
Method: single particle / : Small GI, Darst SA, Campbell EA

EMDB-29645:
Cryo-EM structure of an orphan GPCR-Gi protein signaling complex
Method: single particle / : Zhang X, Wang YJ, Li X, Liu GB, Gong WM, Zhang C

EMDB-29530:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-29531:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-40240:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-16930:
virus enhancing amyloid fibril formed by CKFKFQF
Method: helical / : Heerde T, Schmidt M, Faendrich M

EMDB-28782:
Cryo-EM structure of Kap114 bound to H2A-H2B
Method: single particle / : Jiou J, Chook YM

EMDB-28788:
Cryo-EM structure of Kap114 bound to Gsp1 (RanGTP)
Method: single particle / : Jiou J, Chook YM

EMDB-28796:
Cryo-EM structure of Kap114 bound to Gsp1 (RanGTP) and H2A-H2B
Method: single particle / : Jiou J, Chook YM

EMDB-28899:
Cryo-EM structure of Importin-9 bound to RanGTP
Method: single particle / : Bernardes NE, Chook YM

EMDB-33514:
Cryo-EM structure of secondary alcohol dehydrogenases TbSADH after carrier-free immobilization based on weak intermolecular interactions
Method: single particle / : Chen Q, Li X, Yang F, Qu G, Sun ZT, Wang YJ

EMDB-34258:
Cryo-EM structure of the gasdermin B pore
Method: single particle / : Hou YJ, Cheng H, Ding J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more