[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 14,470 items for (author: han & p)

EMDB-44123:
Cryo-EM density of GluK2 amino-terminal domain (GluK2-ATD) from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to ConA
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44126:
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two concanavalin A dimers
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44127:
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one concanavalin A dimer
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-42970:
Model and map from local refinement of a CAB-A17 - Omicron Ba.1 spike complex
Method: single particle / : Hallberg BM, Das H

PDB-8v4f:
Model and map from local refinement of a CAB-A17 - Omicron Ba.1 spike complex
Method: single particle / : Hallberg BM, Das H

EMDB-39582:
Cryo-EM structure of the amthamine-bound H2R-Gs complex
Method: single particle / : Shen Q, Tang X, Wen X, Cheng S, Xiao P, Zang S, Shen D, Jiang L, Zheng Y, Zhang H, Xu H, Mao C, Zhang M, Hu W, Sun J, Chen Z, Zhang Y

EMDB-39583:
Cryo-EM structure of the histamine-bound H3R-Gi complex
Method: single particle / : Shen Q, Tang X, Wen X, Cheng S, Xiao P, Zang S, Shen D, Jiang L, Zheng Y, Zhang H, Xu H, Mao C, Zhang M, Hu W, Sun J, Chen Z, Zhang Y

EMDB-39584:
Cryo-EM structure of the immepip-bound H3R-Gi complex
Method: single particle / : Shen Q, Tang X, Wen X, Cheng S, Xiao P, Zang S, Shen D, Jiang L, Zheng Y, Zhang H, Xu H, Mao C, Zhang M, Hu W, Sun J, Chen Z, Zhang Y

PDB-8yut:
Cryo-EM structure of the amthamine-bound H2R-Gs complex
Method: single particle / : Shen Q, Tang X, Wen X, Cheng S, Xiao P, Zang S, Shen D, Jiang L, Zheng Y, Zhang H, Xu H, Mao C, Zhang M, Hu W, Sun J, Chen Z, Zhang Y

PDB-8yuu:
Cryo-EM structure of the histamine-bound H3R-Gi complex
Method: single particle / : Shen Q, Tang X, Wen X, Cheng S, Xiao P, Zang S, Shen D, Jiang L, Zheng Y, Zhang H, Xu H, Mao C, Zhang M, Hu W, Sun J, Chen Z, Zhang Y

PDB-8yuv:
Cryo-EM structure of the immepip-bound H3R-Gi complex
Method: single particle / : Shen Q, Tang X, Wen X, Cheng S, Xiao P, Zang S, Shen D, Jiang L, Zheng Y, Zhang H, Xu H, Mao C, Zhang M, Hu W, Sun J, Chen Z, Zhang Y

EMDB-36646:
Cryo-EM structure of GeoCas9-sgRNA-dsDNA ternary complex
Method: single particle / : Shen PP, Liu BB, Li X, Zhang LL, Chen CC, Guo RT

PDB-8jtj:
Cryo-EM structure of GeoCas9-sgRNA-dsDNA ternary complex
Method: single particle / : Shen PP, Liu BB, Li X, Zhang LL, Chen CC, Guo RT

EMDB-36650:
Cryo-EM structure of GeoCas9-sgRNA binary complex
Method: single particle / : Shen PP, Liu BB, Li X, Zhang LL, Chen CC, Guo RT

PDB-8jtr:
Cryo-EM structure of GeoCas9-sgRNA binary complex
Method: single particle / : Shen PP, Liu BB, Li X, Zhang LL, Chen CC, Guo RT

EMDB-43161:
Human transthyretin covalently modified with A2-derived stilbene in the canonical conformation
Method: single particle / : Basanta B, Nugroho K, Yan N, Kline GM, Tsai FJ, Wu M, Kelly JW, Lander GC

EMDB-43162:
Unliganded human transthyretin in the canonical conformation
Method: single particle / : Basanta B, Nugroho K, Yan N, Kline GM, Tsai FJ, Wu M, Kelly JW, Lander GC

EMDB-43163:
Unliganded human transthyretin in the compressed conformation
Method: single particle / : Basanta B, Nugroho K, Yan N, Kline GM, Tsai FJ, Wu M, Kelly JW, Lander GC

EMDB-43164:
Unliganded human transthyretin in the frayed conformation
Method: single particle / : Basanta B, Nugroho K, Yan N, Kline GM, Tsai FJ, Wu M, Kelly JW, Lander GC

EMDB-43165:
(Biarylamine-FT2-WT)1(C10A)3-human transthyretin in the compressed conformation
Method: single particle / : Basanta B, Nugroho K, Yan N, Kline GM, Tsai FJ, Wu M, Kelly JW, Lander GC

EMDB-43166:
(Biarylamine-FT2-WT)1(C10A)3-human transthyretin in the frayed conformation
Method: single particle / : Basanta B, Nugroho K, Yan N, Kline GM, Tsai FJ, Wu M, Kelly JW, Lander GC

EMDB-38156:
Structure of enterovirus protease in complex host factor
Method: single particle / : Gao X, Cui S

PDB-8x8q:
Structure of enterovirus protease in complex host factor
Method: single particle / : Gao X, Cui S

EMDB-29330:
N332-GT5 SOSIP in complex with base polyclonal Fabs isolated at day 42 from protein immunized wild type mice
Method: single particle / : Torres JL, Jackson AM, Ozorowski G, Ward AB

EMDB-29333:
N332-GT5 SOSIP in complex with base polyclonal Fabs isolated at day 42 from protein immunized BG18HCgl knock-in mice
Method: single particle / : Torres JL, Jackson AM, Ozorowski G, Ward AB

EMDB-29334:
N332-GT5 SOSIP in complex with V1V3 polyclonal Fabs isolated at day 16 from mRNA immunized wild type mice
Method: single particle / : Torres JL, Jackson AM, Ozorowski G, Ward AB

EMDB-29335:
N332-GT5 SOSIP in complex with V1V3 polyclonal Fabs isolated at day 42 from mRNA immunized BG18HCgl knock-in mice
Method: single particle / : Torres JL, Jackson AM, Ozorowski G, Ward AB

EMDB-43191:
N332-GT5 SOSIP in complex with V1V3 polyclonal Fabs isolated at day 14 from N332-GT2 nanoparticle-immunized BG18HCgl knock-in mice
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-43192:
N332-GT5 SOSIP in complex with V1V3 polyclonal Fabs isolated at day 15 from N332-GT5 nanoparticle-immunized BG18HCgl knock-in mice
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-42676:
5-HT2AR bound to Lisuride in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Barros-Alvarez X, Kim K, Panova O, Roth BL, Skiniotis G

EMDB-42999:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

PDB-8uwl:
5-HT2AR bound to Lisuride in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
Method: single particle / : Barros-Alvarez X, Kim K, Panova O, Roth BL, Skiniotis G

PDB-8v6u:
5HT2AR-miniGq heterotrimer in complex with a novel agonist obtained from large scale docking
Method: single particle / : Gumpper RH, Wang L, Kapolka N, Skiniotis G, Roth BL

EMDB-39064:
Structure of NET-Maprotiline in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

EMDB-39065:
Structure of NET-Nefopam in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

EMDB-39066:
Structure of NET-nomifensine in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

EMDB-39067:
structure of NET-Atomoxetine in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

EMDB-39068:
Structure of NET-Amitriptyline in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

EMDB-39069:
Structure of Apo human norepinephrine transporter NET
Method: single particle / : Zhang H, Xu HE, Jiang Y

EMDB-39070:
Structure of NET-NE in Occluded state
Method: single particle / : Zhang H, Xu HE, Jiang Y

EMDB-39533:
Structure of NET-Nisoxetine in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

PDB-8y8z:
Structure of NET-Maprotiline in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

PDB-8y90:
Structure of NET-Nefopam in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

PDB-8y91:
Structure of NET-nomifensine in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

PDB-8y92:
structure of NET-Atomoxetine in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

PDB-8y93:
Structure of NET-Amitriptyline in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

PDB-8y94:
Structure of Apo human norepinephrine transporter NET
Method: single particle / : Zhang H, Xu HE, Jiang Y

PDB-8y95:
Structure of NET-NE in Occluded state
Method: single particle / : Zhang H, Xu HE, Jiang Y

PDB-8yr2:
Structure of NET-Nisoxetine in outward-open state
Method: single particle / : Zhang H, Xu EH, Jiang Y

EMDB-37640:
Cryo-EM structure of DiCas7-11 in complex with crRNA
Method: single particle / : Ma HY, Tang XD

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more