 Entry |
| Summary |
| Database / ID | EM DATA BANK (EMDB) / 5136 |
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| Title | CryoEM Structure of Tubular Assembly of HIV-1 CA and Evidence for a Novel Interface
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| Map | This is a map of tubular assembly of HIV-1 CA |
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| Sample | HIV-1 CA A92E |
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| Authors | Byeon IL, Meng X, Jung J, Zhao G, Ahn J, Concel J, Aiken C, Gronenborn AM, Zhang P |
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| Date | Deposition: 2009-10-20, Header release: 2009-11-09, Map release: 2010-05-05, Last update: 2011-09-27 |
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| EMDB Sites |  EMDB @PDBe (EU), EMDB @RCSB (USA) |
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| Structure Visualization |
| Movies |  Movie Page
#1: Surface view with section colored by density value, Surface level: 0.0055, Made by UCSF CHIMERA #2: Surface view colored by cylindrical radius, Surface level: 0.0055, Made by UCSF CHIMERA |
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| Supplemental images |
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| Structure viewers |  Yorodumi,  Launch PeppeR (About PeppeR), Volume viewer (RCSB, PDBe) |
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| Related Structure Data |
| Related Entries |
Cite: data citing same article |
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| Similar strucutres (beta) |
 List of similar structure data  about Omokage system |
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 Article |
| Citation - Primary |
| Article | Cell, Vol. 139, Issue 4, Page 780-90, Year 2009 |
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| Title | Structural convergence between Cryo-EM and NMR reveals intersubunit interactions critical for HIV-1 capsid function. |
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| Authors | In-Ja L Byeon, Xin Meng, Jinwon Jung, Gongpu Zhao, Ruifeng Yang, Jinwoo Ahn, Jiong Shi, Jason Concel, Christopher Aiken, Peijun Zhang, Angela M Gronenborn
Department of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260, USA. |
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| Keywords |  Capsid Proteins (chemistry), Cryoelectron Microscopy, HIV-1 (chemistry), Nuclear Magnetic Resonance, Biomolecular, RNA, Viral (metabolism), Virus Assembly |
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| Links | PII: S0092-8674(09)01298-7, DOI: 10.1016/j.cell.2009.10.010, PubMed: 19914170, PMC: PMC2782912 |
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 Map |
| File |  EMD-5136.map ( map file in CCP4 format, 27650 KB ) |
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| Projections & Slices | Size of images: Images are generated by Spider package. |
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| Density |
| Contour Level: | 0.01 (by emdb), 0.0055 (movie #1): |
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| Minimum - Maximum: | -0.0263844 - 0.0278307 |
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| Average (Standard dev.): | 0.00019507 (0.00626063) |
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| Data Type | Image stored as Reals |
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| Space Group Number | 1 |
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| Map Geometry | | Axis order | X | Y | Z |
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| Dimensions | 240 | 240 | 120 |
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| Origin | 0 | 0 | 0 |
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| Limit | 239 | 239 | 119 |
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| Spacing | 240 | 240 | 120 |
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| Unit Cell | A: 516 A, B: 516 A, C: 258 A
Alpha=beta=gamma: 90 degrees |
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| Pixel Spacing | X= Y= Z: 2.15 A |
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| CCP4 map header info | | mode | Image stored as Reals |
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| A/pix X/Y/Z | 2.15 | 2.15 | 2.15 |
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| M x/y/z | 240 | 240 | 120 |
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| origin x/y/z | 0.000 | 0.000 | 0.000 |
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| length x/y/z | 516.000 | 516.000 | 258.000 |
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| alpha/beta/gamma | 90.000 | 90.000 | 90.000 |
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| start NX/NY/NZ | -34 | -26 | -72 |
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| NX/NY/NZ | 69 | 53 | 145 |
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| MAP C/R/S | 1 | 2 | 3 |
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| start NC/NR/NS | 0 | 0 | 0 |
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| NC/NR/NS | 240 | 240 | 120 |
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| start NC,NX/NR,NY/NS,NZ | | | |
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| NC,NX/NR,NY/NS,NZ | | | |
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| D min/max/mean | -0.026 | 0.028 | 0.000 |
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| Annotation Details | This is a map of tubular assembly of HIV-1 CA |
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