 Entry |
| Summary |
| Database / ID | EM DATA BANK (EMDB) / 1821 |
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| Authors | Buschhorn BA, Petzold G, Galova M, Dube P, Kraft C, Herzog F, Peters JM, Stark H |
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| EMDB Sites |  EMDB @PDBe (EU), EMDB @RCSB (USA) |
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| Structure Visualization |
| Movies |  Movie Page
#1: Surface view with section colored by density value, Surface level: 0.08, Made by UCSF CHIMERA #2: Surface view colored by radius, Surface level: 0.08, Made by UCSF CHIMERA |
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| Supplemental images |
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| Structure viewers |  Yorodumi,  Launch PeppeR (About PeppeR), Volume viewer (RCSB, PDBe) |
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| Related Structure Data |
| Related Entries |
Cite: data citing same article |
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| Similar strucutres (beta) |
 List of similar structure data  about Omokage system |
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 Article |
| Citation - Primary |
| Article | Nat. Struct. Mol. Biol., Vol. 18, Issue 1, Page 6-13, Year 2011 |
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| Title | Substrate binding on the APC/C occurs between the coactivator Cdh1 and the processivity factor Doc1. |
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| Authors | Bettina A Buschhorn, Georg Petzold, Marta Galova, Prakash Dube, Claudine Kraft, Franz Herzog, Holger Stark, Jan-Michael Peters
Research Institute of Molecular Pathology (IMP), Vienna, Austria. |
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| Keywords |  CDC16 protein, S cerevisiae, CDC27 protein, S cerevisiae (6.3.2.19), CDH1 protein, human, Cadherins (metabolism), Cell Cycle Proteins (metabolism), Cytokines (metabolism), DOC1 protein, S cerevisiae, DOC1 protein, human, Hct1 protein, S cerevisiae, Humans, Saccharomyces cerevisiae (enzymology), Saccharomyces cerevisiae Proteins (metabolism), Ubiquitin-Protein Ligase Complexes (chemistry, 6.3.2.19), Ubiquitin-Protein Ligases (metabolism, 6.3.2.19), Ubiquitination, anaphase-promoting complex (6.3.2.19) |
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| Links | DOI: 10.1038/nsmb.1979, PubMed: 21186364 |
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 Map |
| File |  EMD-1821.map ( map file in CCP4 format, 4002 KB ) |
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| Projections & Slices | Size of images: | Axes |  Z (Sec.) |  Y (Row.) |  X (Col.) |
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| Surface |  |  |  |
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Projections |  |  |  |
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Slices (1/3) |  |  |  |
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Slices (1/2) |  |  |  |
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Slices (2/3) |  |  |  |
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Images are generated by Spider package. |
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| Density |
| Contour Level: | 0.08 (by author), 0.08 (movie #1): |
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| Minimum - Maximum: | -0.49782348 - 0.81367147 |
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| Average (Standard dev.): | -0.00016081 (0.07102545) |
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|
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| Data Type | Image stored as Reals |
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| Space Group Number | 1 |
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| Map Geometry | | Axis Order : | X | Y | Z |
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| Dimensions : | 100 | 100 | 100 |
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| Origin : | 0 | 0 | 0 |
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| Limit : | 99 | 99 | 99 |
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| Spacing : | 100 | 100 | 100 |
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|
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| Unit Cell | A = 360.0 A , B = 360.0 A , C = 360.0 A ,
alpha = 90.0 degrees , beta = 90.0 degrees , gamma = 90.0 degrees |
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| Pixel Spacing | X = 3.6 A , Y = 3.6 A , Z = 3.6 A |
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| CCP4 map header info | | mode | Image stored as Reals |
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| A/pix X/Y/Z | 3.6 | 3.6 | 3.6 |
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| M x/y/z | 100 | 100 | 100 |
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| origin x/y/z | 0.000 | 0.000 | 0.000 |
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| length x/y/z | 360.000 | 360.000 | 360.000 |
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| alpha/beta/gamma | 90.000 | 90.000 | 90.000 |
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| start NX/NY/NZ | -70 | -70 | -70 |
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| NX/NY/NZ | 140 | 140 | 140 |
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| MAP C/R/S | 1 | 2 | 3 |
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| start NC/NR/NS | 0 | 0 | 0 |
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| NC/NR/NS | 100 | 100 | 100 |
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| start NC,NX/NR,NY/NS,NZ | | | |
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| NC,NX/NR,NY/NS,NZ | | | |
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| D min/max/mean | -0.498 | 0.814 | -0.000 |
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| Annotation Details | 3D structure of the human Anaphase Promoting Complex substrate complex.3. |
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image1821.png (367.8 KB)
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