 Entry |
| Summary |
| Database / ID | EM DATA BANK (EMDB) / 1661 |
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| Authors | Luik P, Chew C, Aittoniemi J, Chang J, Wentworth P, Dwek RA, Biggin PC, Venien-Bryan C, Zitzmann N |
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| EMDB Sites |  EMDB @PDBe (EU), EMDB @RCSB (USA) |
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| Structure Visualization |
| Movies |  Movie Page
#1: Surface view with section colored by density value, Surface level: 0.035, Made by UCSF CHIMERA #2: Surface view colored by cylindrical radius, Surface level: 0.035, Made by UCSF CHIMERA |
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| Supplemental images |
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| Structure viewers |  Yorodumi,  Launch PeppeR (About PeppeR), Volume viewer (RCSB, PDBe) |
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| Related Structure Data |
| Similar strucutres (beta) |
 List of similar structure data  about Omokage system |
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 Article |
| Citation - Primary |
| Article | Proc. Natl. Acad. Sci. U.S.A., Vol. 106, Issue 31, Page 12712-6, Year 2009 |
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| Title | The 3-dimensional structure of a hepatitis C virus p7 ion channel by electron microscopy. |
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| Authors | Philipp Luik, Chee Chew, Jussi Aittoniemi, Jason Chang, Paul Wentworth, Raymond A Dwek, Philip C Biggin, Catherine Vénien-Bryan, Nicole Zitzmann
Department of Biochemistry and Oxford Glycobiology Institute, University of Oxford, South Parks Road, Oxford OX1 3QU, United Kingdom. |
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| Keywords |  Imaging, Three-Dimensional, Microscopy, Electron, Microscopy, Immunoelectron, Models, Molecular, Viral Proteins (chemistry), p7 protein, Hepatitis C virus |
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| Links | DOI: 10.1073/pnas.0905966106, PubMed: 19590017, PMC: PMC2722341 |
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 Map |
| File |  EMD-1661.map ( map file in CCP4 format, 1050 KB ) |
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| Projections & Slices | Size of images: | Axes |  Z (Sec.) |  Y (Row.) |  X (Col.) |
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| Surface |  |  |  |
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Projections |  |  |  |
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Slices (1/3) |  |  |  |
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Slices (1/2) |  |  |  |
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Slices (2/3) |  |  |  |
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Images are generated by Spider package. |
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| Density |
| Contour Level: | 0.035 (by author), 0.035 (movie #1): |
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| Minimum - Maximum: | -0.0164729 - 0.0843588 |
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| Average (Standard dev.): | 0.00149795 (0.00843059) |
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|
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| Data Type | Image stored as Reals |
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| Space Group Number | 1 |
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| Map Geometry | | Axis Order : | X | Y | Z |
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| Dimensions : | 64 | 64 | 64 |
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| Origin : | -32 | -32 | -32 |
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| Limit : | 31 | 31 | 31 |
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| Spacing : | 64 | 64 | 64 |
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|
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| Unit Cell | A = 177.28 A , B = 177.28 A , C = 177.28 A ,
alpha = 90 degrees , beta = 90 degrees , gamma = 90 degrees |
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| Pixel Spacing | X = 2.77 A , Y = 2.77 A , Z = 2.77 A |
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| CCP4 map header info | | mode | Image stored as Reals |
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| A/pix X/Y/Z | 2.77 | 2.77 | 2.77 |
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| M x/y/z | 64 | 64 | 64 |
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| origin x/y/z | 0.000 | 0.000 | 0.000 |
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| length x/y/z | 177.280 | 177.280 | 177.280 |
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| alpha/beta/gamma | 90.000 | 90.000 | 90.000 |
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| start NX/NY/NZ | 0 | 0 | 0 |
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| NX/NY/NZ | 294 | 294 | 294 |
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| MAP C/R/S | 1 | 2 | 3 |
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| start NC/NR/NS | -32 | -32 | -32 |
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| NC/NR/NS | 64 | 64 | 64 |
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| start NC,NX/NR,NY/NS,NZ | | | |
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| NC,NX/NR,NY/NS,NZ | | | |
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| D min/max/mean | -0.016 | 0.084 | 0.001 |
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| Annotation Details | Top view of the EM density map of the HCV p7 channel |
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