 Entry |
| Summary |
| Database / ID | EM DATA BANK (EMDB) / 1199 |
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| Authors | Namy O, Moran SJ, Stuart DI, Gilbert RJC, Brierley I |
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| EMDB Sites |  EMDB @PDBe (EU), EMDB @RCSB (USA) |
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| Structure Visualization |
| Movies |  Movie Page
#1: Surface view with section colored by density value, Surface level: 27, Made by UCSF CHIMERA #2: Surface view colored by height, Surface level: 27, Made by UCSF CHIMERA |
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| Supplemental images |
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| Structure viewers |  Yorodumi,  Launch PeppeR (About PeppeR), Volume viewer (RCSB, PDBe) |
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| Related Structure Data |
| Related Entries |
Cite: data citing same article |
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| Similar strucutres (beta) |
 List of similar structure data  about Omokage system |
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 Article |
| Citation - Primary |
| Article | Nature, Vol. 441, Issue 7090, Page 244-7, Year 2006 |
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| Title | A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting. |
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| Authors | Olivier Namy, Stephen J Moran, David I Stuart, Robert J C Gilbert, Ian Brierley
Division of Virology, Department of Pathology, University of Cambridge, Tennis Court Road, Cambridge CB2 1QP, UK. |
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| Keywords |  Animals, Coronavirus (genetics), Frameshift Mutation (genetics), Frameshifting, Ribosomal (physiology), Models, Biological, Models, Molecular, Movement, Nucleic Acid Conformation, RNA, Messenger (chemistry), RNA, Transfer (chemistry, 9014-25-9), Rabbits, Ribosomes (chemistry) |
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| Links | DOI: 10.1038/nature04735, PubMed: 16688178 |
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 Map |
| File |  EMD-1199.map ( map file in CCP4 format, 16385 KB ) |
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| Projections & Slices | Size of images: | Axes |  Z (Sec.) |  X (Row.) |  Y (Col.) |
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| Surface |  |  |  |
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Projections |  |  |  |
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Slices (1/3) |  |  |  |
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Slices (1/2) |  |  |  |
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Slices (2/3) |  |  |  |
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Images are generated by Spider package. |
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| Density |
| Contour Level: | 26.3, 27 (movie #1): |
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| Minimum - Maximum: | -152.78 - 200 |
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| Average (Standard dev.): | -1.32511 (13.7607) |
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|
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| Data Type | float (32-bit) |
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| Space Group Number | 1 |
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| Map Geometry | | Axis Order : | Y | X | Z |
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| Dimensions : | 160 | 160 | 160 |
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| Origin : | -80 | -80 | -79 |
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| Limit : | 79 | 79 | 80 |
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| Spacing : | 160 | 160 | 160 |
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|
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| Unit Cell | A = 532.8 A , B = 532.8 A , C = 532.8 A ,
alpha = 90 degrees , beta = 90 degrees , gamma = 90 degrees |
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| Pixel Spacing | X = 3.33 A , Y = 3.33 A , Z = 3.33 A |
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| CCP4 map header info | | mode | Image stored as Reals |
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| A/pix X/Y/Z | 3.33 | 3.33 | 3.33 |
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| M x/y/z | 160 | 160 | 160 |
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| origin x/y/z | 0.000 | 0.000 | 0.000 |
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| length x/y/z | 532.800 | 532.800 | 532.800 |
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| alpha/beta/gamma | 90.000 | 90.000 | 90.000 |
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| start NX/NY/NZ | -80 | -80 | -79 |
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| NX/NY/NZ | 160 | 160 | 160 |
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| MAP C/R/S | 2 | 1 | 3 |
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| start NC/NR/NS | -80 | -80 | -79 |
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| NC/NR/NS | 160 | 160 | 160 |
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| start NC,NX/NR,NY/NS,NZ | | | |
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| NC,NX/NR,NY/NS,NZ | | | |
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| D min/max/mean | -152.780 | 200.000 | -1.325 |
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| Annotation Details | Reconstruction of rabbit reticulocyte ribosome, purified from Promega RRL lysate |
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