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Localization of the large subunit ribosomal proteins into a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

by single particle reconstruction, at 5.5 A resolution

Movie

Orientation:

#1: Depositted structure unit, Made by Jmol

#2: Superimposing with simplified surface model of EM map, EMDB-1780, Made by Jmol

#3: With PDB-3iz6, PDB-3iz7, PDB-3iz9, Made by Jmol

#4: Superimposing with EM 3D map: EMDB-1780 (with PDB-3iz6, PDB-3iz7, PDB-3iz9), Made by UCSF CHIMERA

Entry
Summary
Database / IDPORTEIN DATA BANK (PDB) / 3izr
TitleLocalization of the large subunit ribosomal proteins into a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
DescriptorRibosomal protein
60S ribosomal protein L2
Ribosomal protein L11
60S ribosomal protein L9
60S ribosomal protein L7a
60S ribosomal protein L10-1
Ribosomal protein L17
Ribosomal protein L15
60S ribosomal protein L27a
Ribosomal protein L18
60S ribosomal protein L5-2
Ribosomal protein L19
60s ribosomal protein L21
ribosomal protein L17
60S ribosomal protein L23A
60S ribosomal protein L24
60S ribosomal protein L26-1
60S ribosomal L28 protein
60S ribosomal protein L29
60S ribosomal protein L30
60S ribosomal protein L31
Ribosomal L32
Ribosomal protein L37
60S ribosomal protein L38
Ribosomal protein L39
60S ribosomal protein L44
Putative uncharacterized protein
60S ribosomal protein L6
Ribosomal protein L14
Os01g0752300 protein
60S ribosomal protein L22
Ribosomal protein l34
ribosomal protein L35A
60S ribosomal protein L36
Os03g0234200 protein
Os04g0598200 protein
Ribosomal protein P1
Acidic ribosomal protein P2
60S ribosomal protein L35
Ribosomal protein L7
60S acidic ribosomal protein P0
60S ribosomal protein L4/L1
Ribosomal protein L13a
60S ribosomal protein L37a

KeywordsRIBOSOME, eukaryotic ribosome, homology modeling, de novo modeling, ribosomal proteins, novel ribosomal proteins
AuthorsArmache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke. T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.
DateDeposition: 2010-12-06, Release: 2010-12-15
PDBj Mine pagesSummary, Structural Details, Experimental Details, Functional Details
Other databasesRCSB-PDB, PDBe, CATH, CE, FSSP, SCOP, VAST
Sequence detailsTHE CRYO-EM MAP WAS OBTAINED FROM T. AESTIVUM. SOME OF THE CHAINS WERE MODELED USING THE HOMOLOGS FROM OTHER ORGANISMS.
Structure Visualization
MoviesMovie Page

#1: Depositted structure unit, Made by Jmol

#2: Superimposing with simplified surface model of EM map, EMDB-1780, Made by Jmol

#3: With PDB-3iz6, PDB-3iz7, PDB-3iz9, Made by Jmol

#4: Superimposing with EM 3D map: EMDB-1780 (with PDB-3iz6, PDB-3iz7, PDB-3iz9), Made by UCSF CHIMERA

Structure viewersYorodumi, jV4, Jmol, Biological unit (Images, jV)
Related Structure Data
Related Entries

EMDB-1780

CiteFit

PDB-3iz6

CiteSplit

PDB-3iz7

CiteSplit

PDB-3iz9

CiteSplit

Cite: data citing same article

Fit: target map of fitting

Split: split data constructing the same model

Similar strucutres (beta)
List of similar structure data about Omokage system
Article
Citation - primary
ArticleProc. Natl. Acad. Sci. U.S.A., Vol. 107, Issue 46, Page 19754-9, Year 2010
TitleLocalization of eukaryote-specific ribosomal proteins in a 5.5-Å cryo-EM map of the 80S eukaryotic ribosome.
AuthorsJean-Paul Armache, Alexander Jarasch, Andreas M Anger, Elizabeth Villa, Thomas Becker, Shashi Bhushan, Fabrice Jossinet, Michael Habeck, Gülcin Dindar, Sibylle Franckenberg, Viter Marquez, Thorsten Mielke, Michael Thomm, Otto Berninghausen, Birgitta Beatrix, Johannes Söding, Eric Westhof, Daniel N Wilson, Roland Beckmann
Gene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor-Lynen-Strasse 25, 81377 Munich, Germany.
KeywordsCryoelectron Microscopy, Eukaryotic Cells (metabolism), Evolution, Molecular, Models, Molecular, Protein Transport, RNA, Ribosomal (chemistry), Ribosomal Proteins (metabolism), Ribosomes (metabolism), Saccharomyces cerevisiae (metabolism), Species Specificity, Triticum (metabolism)
LinksDOI: 10.1073/pnas.1010005107, PubMed: 20974910, PMC: PMC2993421
Citation - 1
ArticleProc. Natl. Acad. Sci. U.S.A., Vol. 107, Issue 46, Page 19748-53, Year 2010
TitleCryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.
AuthorsJean-Paul Armache, Alexander Jarasch, Andreas M Anger, Elizabeth Villa, Thomas Becker, Shashi Bhushan, Fabrice Jossinet, Michael Habeck, Gülcin Dindar, Sibylle Franckenberg, Viter Marquez, Thorsten Mielke, Michael Thomm, Otto Berninghausen, Birgitta Beatrix, Johannes Söding, Eric Westhof, Daniel N Wilson, Roland Beckmann
Gene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor-Lynen-Strasse 25, 81377 Munich, Germany.
KeywordsCryoelectron Microscopy, Crystallography, X-Ray, Escherichia coli (metabolism), Eukaryotic Cells (metabolism), Humans, Models, Molecular, Protein Biosynthesis, RNA, Ribosomal (ultrastructure), Ribosomes (chemistry), Saccharomyces cerevisiae (metabolism), Triticum (metabolism)
LinksDOI: 10.1073/pnas.1009999107, PubMed: 20980660, PMC: PMC2993355
Components
ID 1 : 60S ribosomal protein L1 (L1p)
Image
Description60S ribosomal protein L1 (L1p)
Typepolymer
Formula weight24604.406 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum

LinksUniProt: Q5I7L3, Sequence view
ID 2 : 60S ribosomal protein L2 (L2p)
Image
Description60S ribosomal protein L2 (L2p)
Typepolymer
Formula weight28309.861 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q2QNF3, Sequence view
ID 3 : 60S ribosomal protein L11 (L5p)
Image
Description60S ribosomal protein L11 (L5p)
Typepolymer
Formula weight20727.240 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q5I7L2, Sequence view
ID 4 : 60S ribosomal protein L9 (L6p)
Image
Description60S ribosomal protein L9 (L6p)
Typepolymer
Formula weight21382.975 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: P49210, Sequence view
ID 5 : 60S ribosomal protein L7a (L7ae)
Image
Description60S ribosomal protein L7a (L7ae)
Typepolymer
Formula weight29368.363 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: P35685, Sequence view
ID 6 : 60S ribosomal protein L23 (L14p)
Image
Description60S ribosomal protein L23 (L14p)
Typepolymer
Formula weight15040.948 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q5I7K4, Sequence view
ID 7 : 60S ribosomal protein L15 (L15e)
Image
Description60S ribosomal protein L15 (L15e)
Typepolymer
Formula weight24395.760 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q8H8S1, Sequence view
ID 8 : 60S ribosomal protein L27a (L15p)
Image
Description60S ribosomal protein L27a (L15p)
Typepolymer
Formula weight15834.893 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q6EUQ7, Sequence view
ID 9 : 60S ribosomal protein L18 (L18e)
Image
Description60S ribosomal protein L18 (L18e)
Typepolymer
Formula weight21379.504 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q5I7L0, Sequence view
ID 10 : 60S ribosomal protein L5 (L18p)
Image
Description60S ribosomal protein L5 (L18p)
Typepolymer
Formula weight34723.461 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q8L4L4, Sequence view
ID 11 : 60S ribosomal protein L19 (L19e)
Image
Description60S ribosomal protein L19 (L19e)
Typepolymer
Formula weight24486.115 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q7XY20, Sequence view
ID 12 : 60S ribosomal protein L21 (L21e)
Image
Description60S ribosomal protein L21 (L21e)
Typepolymer
Formula weight18691.898 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q7XYC9, Sequence view
ID 13 : 60S ribosomal protein L17 (L22p)
Image
Description60S ribosomal protein L17 (L22p)
Typepolymer
Formula weight19536.658 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q6K1W6, Sequence view
ID 14 : 60S ribosomal protein L23a (L23p)
Image
Description60S ribosomal protein L23a (L23p)
Typepolymer
Formula weight17091.594 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q94CM9, Sequence view
ID 15 : 60S ribosomal protein L24 (L24e)
Image
Description60S ribosomal protein L24 (L24e)
Typepolymer
Formula weight18505.031 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q5N754, Sequence view
ID 16 : 60S ribosomal protein L26 (L24p)
Image
Description60S ribosomal protein L26 (L24p)
Typepolymer
Formula weight16971.912 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q2QXN5, Sequence view
ID 17 : 60S ribosomal protein L28 (L28e)
Image
Description60S ribosomal protein L28 (L28e)
Typepolymer
Formula weight16639.592 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q5TKP3, Sequence view
ID 18 : 60S ribosomal protein L29 (L29e)
Image
Description60S ribosomal protein L29 (L29e)
Typepolymer
Formula weight7069.084 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q9FP55, Sequence view
ID 19 : 60S ribosomal protein L30 (L30e)
Image
Description60S ribosomal protein L30 (L30e)
Typepolymer
Formula weight12294.481 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q5I7K9, Sequence view
ID 20 : 60S ribosomal protein L31 (L31e)
Image
Description60S ribosomal protein L31 (L31e)
Typepolymer
Formula weight14092.458 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q6ZGV5, Sequence view
ID 21 : 60S ribosomal protein L32 (L32e)
Image
Description60S ribosomal protein L32 (L32e)
Typepolymer
Formula weight15740.784 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q3MST7, Sequence view
ID 22 : 60S ribosomal protein L37 (L37e)
Image
Description60S ribosomal protein L37 (L37e)
Typepolymer
Formula weight10823.726 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q6Z8Y5, Sequence view
ID 23 : 60S ribosomal protein L38 (L38e)
Image
Description60S ribosomal protein L38 (L38e)
Typepolymer
Formula weight8053.678 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q8GVY2, Sequence view
ID 24 : 60S ribosomal protein L39 (L39e)
Image
Description60S ribosomal protein L39 (L39e)
Typepolymer
Formula weight6528.846 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q5I7K7, Sequence view
ID 25 : 60S ribosomal protein L42 (L44e)
Image
Description60S ribosomal protein L42 (L44e)
Typepolymer
Formula weight12174.534 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q8H5N0, Sequence view
ID 26 : 60S ribosomal protein L41 (L41e)
Image
Description60S ribosomal protein L41 (L41e)
Typepolymer
Formula weight3445.458 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q8GVZ2, Sequence view
ID 27 : Unknown 60S ribosomal protein XL
Image
DescriptionUnknown 60S ribosomal protein XL
Typepolymer
Formula weight1720.123 Da
Number of molecules2
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksSequence view
ID 28 : Unknown 60S ribosomal protein XL3
Image
DescriptionUnknown 60S ribosomal protein XL3
Typepolymer
Formula weight1209.491 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksSequence view
ID 29 : 60S ribosomal protein L6 (L6e)
Image
Description60S ribosomal protein L6 (L6e)
Typepolymer
Formula weight24589.963 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q5I7L4, Sequence view
ID 30 : 60S ribosomal protein L13 (L13e)
Image
Description60S ribosomal protein L13 (L13e)
Typepolymer
Formula weight15592.276 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksSequence view
ID 31 : 60S ribosomal protein L14 (L14e)
Image
Description60S ribosomal protein L14 (L14e)
Typepolymer
Formula weight15418.488 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q6K1Q6, Sequence view
ID 32 : 60S ribosomal protein L18a (L18ae)
Image
Description60S ribosomal protein L18a (L18ae)
Typepolymer
Formula weight21444.395 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q0JJA0, Sequence view
ID 33 : 60S ribosomal protein L22 (L22e)
Image
Description60S ribosomal protein L22 (L22e)
Typepolymer
Formula weight14443.715 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q6YSX0, Sequence view
ID 34 : 60S ribosomal protein L27 (L27e)
Image
Description60S ribosomal protein L27 (L27e)
Typepolymer
Formula weight15508.757 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q7XC31, Sequence view
ID 35 : 60S ribosomal protein L34 (L34e)
Image
Description60S ribosomal protein L34 (L34e)
Typepolymer
Formula weight13808.531 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q5I7K8, Sequence view
ID 36 : 60S ribosomal protein L35a (L35ae)
Image
Description60S ribosomal protein L35a (L35ae)
Typepolymer
Formula weight12684.832 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q6I608, Sequence view
ID 37 : 60S ribosomal protein L36 (L36e)
Image
Description60S ribosomal protein L36 (L36e)
Typepolymer
Formula weight12563.149 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q5I7L5, Sequence view
ID 38 : 60S ribosomal protein L40 (L40e)
Image
Description60S ribosomal protein L40 (L40e)
Typepolymer
Formula weight6295.680 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q10PH1, Sequence view
ID 39 : 60S ribosomal protein L12 (L11p)
Image
Description60S ribosomal protein L12 (L11p)
Typepolymer
Formula weight17775.838 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q0JAI2, Sequence view
ID 40 : 60S acidic ribosomal protein P11 - P1 (L12P)
Image
Description60S acidic ribosomal protein P11 - P1 (L12P)
Typepolymer
Formula weight11204.690 Da
Number of molecules2
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q5I7K5, Sequence view
ID 41 : 60S acidic ribosomal protein P21 - P2 (L12P)
Image
Description60S acidic ribosomal protein P21 - P2 (L12P)
Typepolymer
Formula weight11597.089 Da
Number of molecules2
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q7X729, Sequence view
ID 42 : 60S ribosomal protein L35 (L29p)
Image
Description60S ribosomal protein L35 (L29p)
Typepolymer
Formula weight14401.178 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q8L805, Sequence view
ID 43 : 60S ribosomal protein L7 (L30p)
Image
Description60S ribosomal protein L7 (L30p)
Typepolymer
Formula weight28175.363 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q5I7K6, Sequence view
ID 44 : 60S acidic ribosomal protein P0 (L10p)
Image
Description60S acidic ribosomal protein P0 (L10p)
Typepolymer
Formula weight34418.832 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: P41095, Sequence view
ID 45 : 60S ribosomal protein L3 (L3p)
Image
Description60S ribosomal protein L3 (L3p)
Typepolymer
Formula weight44720.809 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q7X744, Sequence view
ID 46 : 60S ribosomal protein L4 (L4p)
Image
Description60S ribosomal protein L4 (L4p)
Typepolymer
Formula weight44822.438 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q6ZLB8, Sequence view
ID 47 : 60S ribosomal protein L13a (L13p)
Image
Description60S ribosomal protein L13a (L13p)
Typepolymer
Formula weight23581.338 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q5I7L1, Sequence view
ID 48 : 60S ribosomal protein L43 (L37ae)
Image
Description60S ribosomal protein L43 (L37ae)
Typepolymer
Formula weight10266.216 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q5QM99, Sequence view
ID 49 : 60S ribosomal protein L10 (L10e)
Image
Description60S ribosomal protein L10 (L10e)
Typepolymer
Formula weight25400.961 Da
Number of molecules1
SourceMethod: Isolated from a natural source
Common name: wheat
NCBI taxonomy: ID:4565
Organism scientific: Triticum aestivum
LinksUniProt: Q0ITS8, Sequence view
Sample
Assembly
Aggregation statePARTICLE
NameProgrammed Triticum aestivum 80S ribosome
Experiment
Reconstruction methodSINGLE PARTICLE
Specimen typeVITREOUS ICE (CRYO EM)
Sample preparation
pH7.5
Electron Microscopy
Processing
Single particle entity
Symmetry typeASYMMETRIC
3D reconstruction
Actual pixel size1.2375 A/pix
MethodSingle Particle
Nominal pixel size1.2375 A/pix
Resolution5.5 A
SoftwareSpider
Refine hist
Total atoms55921
Protein atoms55921
Download
PDB format
Allpdb3izr.ent.gz
pdb3izr.ent (uncompressed file)
Header onlypdb3izr.ent.gz
mmCIF format
mmCIF3izr.cif.gz
XML format
All3izr.xml.gz
No-atom3izr-noatom.xml.gz
Ext-atom3izr-extatom.xml.gz
Movie files
movie #1
.mp4 (H.264/MPEG-4 AVC format), 2.6 MB
.webm (WebM/VP8 format), 3.5 MB
movie #2
.mp4 (H.264/MPEG-4 AVC format), 3.3 MB
.webm (WebM/VP8 format), 4.4 MB
movie #3
.mp4 (H.264/MPEG-4 AVC format), 2.9 MB
.webm (WebM/VP8 format), 3.8 MB
movie #4
.mp4 (H.264/MPEG-4 AVC format), 3.7 MB
.webm (WebM/VP8 format), 5.5 MB