 Entry |
| Summary |
| Database / ID | EM DATA BANK (EMDB) / 1675 |
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| Authors | Ogura T, Tong KI, Mio K, Maruyama Y, Kurokawa H, Sato C, Yamamoto M |
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| EMDB Sites |  EMDB @PDBe (EU), EMDB @RCSB (USA) |
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| Structure Visualization |
| Movies |  Movie Page
#1: Surface view with section colored by density value, Surface level: 215, Made by UCSF CHIMERA #2: Surface view colored by cylindrical radius, Surface level: 215, Made by UCSF CHIMERA |
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| Supplemental images |
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| Structure viewers |  Yorodumi,  Launch PeppeR (About PeppeR), Volume viewer (RCSB, PDBe) |
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| Related Structure Data |
| Similar strucutres (beta) |
 List of similar structure data  about Omokage system |
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 Article |
| Citation - Primary |
| Article | Proc. Natl. Acad. Sci. U.S.A., Vol. 107, Issue 7, Page 2842-7, Year 2010 |
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| Title | Keap1 is a forked-stem dimer structure with two large spheres enclosing the intervening, double glycine repeat, and C-terminal domains. |
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| Authors | Toshihiko Ogura, Kit I Tong, Kazuhiro Mio, Yuusuke Maruyama, Hirofumi Kurokawa, Chikara Sato, Masayuki Yamamoto
Neuroscience Research Institute and Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, 1-1-4 Umezono, Tsukuba 305-8568, Japan. |
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| Keywords |  Adaptor Proteins, Signal Transducing (chemistry), Animals, Crystallography, X-Ray, Cytoskeletal Proteins (chemistry), Dimerization, Keap1 protein, mouse, Mice, Microscopy, Electron, Transmission, Models, Molecular, NF-E2-Related Factor 2 (metabolism), Protein Binding, Protein Conformation, Protein Structure, Tertiary (genetics) |
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| Links | DOI: 10.1073/pnas.0914036107, PubMed: 20133743, PMC: PMC2840362 |
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 Map |
| File |  EMD-1675.map ( map file in CCP4 format, 4002 KB ) |
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| Projections & Slices | Size of images: | Axes |  Z (Sec.) |  Y (Row.) |  X (Col.) |
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| Surface |  |  |  |
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Projections |  |  |  |
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Slices (1/3) |  |  |  |
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Slices (1/2) |  |  |  |
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Slices (2/3) |  |  |  |
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Images are generated by Spider package. |
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| Density |
| Contour Level: | 215 (by emdb), 215 (movie #1): |
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| Minimum - Maximum: | 0 - 255 |
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| Average (Standard dev.): | 114.131 (32.4104) |
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|
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| Data Type | Image stored as Reals |
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| Space Group Number | 1 |
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| Map Geometry | | Axis Order : | X | Y | Z |
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| Dimensions : | 100 | 100 | 100 |
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| Origin : | 0 | 0 | 0 |
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| Limit : | 99 | 99 | 99 |
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| Spacing : | 100 | 100 | 100 |
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|
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| Unit Cell | A = 192 A , B = 192 A , C = 192 A ,
alpha = 90 degrees , beta = 90 degrees , gamma = 90 degrees |
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| Pixel Spacing | X = 1.92 A , Y = 1.92 A , Z = 1.92 A |
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| CCP4 map header info | | mode | Image stored as Reals |
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| A/pix X/Y/Z | 1.92 | 1.92 | 1.92 |
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| M x/y/z | 100 | 100 | 100 |
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| origin x/y/z | 0.000 | 0.000 | 0.000 |
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| length x/y/z | 192.000 | 192.000 | 192.000 |
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| alpha/beta/gamma | 90.000 | 90.000 | 90.000 |
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| start NX/NY/NZ | 0 | 0 | 0 |
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| NX/NY/NZ | 121 | 121 | 121 |
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| MAP C/R/S | 1 | 2 | 3 |
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| start NC/NR/NS | 0 | 0 | 0 |
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| NC/NR/NS | 100 | 100 | 100 |
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| start NC,NX/NR,NY/NS,NZ | | | |
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| NC,NX/NR,NY/NS,NZ | | | |
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| D min/max/mean | 0.000 | 255.000 | 114.131 |
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| Annotation Details | This is an image of a surface rendered side-view of Keap1 |
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EMD-1675.jpg (39.6 KB)
emd_1675.jpg (39.6 KB)
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