Service and Software

The Japanese version is here.

• jV (PDBj Viewer)
• Yorodumi
• Protein Globe
• ASH
• MAFFTash
• SEALA
• Structure Prediction

jV (PDBj Viewer)

jV is an interactive 3D viewer program to visualize structure of protein and nucleic acid molecules. This program is also possible to use jV3 on a web browser as a Java applet.

URL: http://pdbj.org/jv/index.html

Yorodumi

Yorodumi is a website to easily watch, move, rotate, learn, and enjoy 3D structures of biological molecules.

URL: http://pdbj.org/yorodumi/

Protein Globe

Protein Globe is a graphical interface to the PDBj and other services. This service uses jV as a Java applet, so the jV available environment is required to use it.

URL: http://pdbj.org/globe/globe.cgi

ASH

ASH is a program to perform three-dimensional structure alignment. From the ASH homepage you can run the program over the web or download the software for free.

URL: http://pdbj.org/ash/

MAFFTash

MAFFTash is a tool that calculates multple sequence alignments from sequences and structures.

URL: http://pdbj.org/mafftash/

SEALA

SEALA (SEquence ALignment Analyzer)

URL: http://pdbj.org/seala/

Structure Prediction

We provide three services described below:

• CRNPRED
• Spanner
• SFAS

See Structure Prediction for details.