Search

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• PDB entry search (PDBj Mine)
• Latest Released Search
• Sequence Navigator
• Structure Navigator
• SeSAW
• GIRAF
• EM Navigator
• NMR data search (BMRB)
• Status Search

PDB entry search (PDBj Mine)

PDBj Mine is a new generic interface to search PDB entries by PDB ID and keyword etc. See also Basic Usage.

URL: http://service.pdbj.org/mine

Latest Released Search

This service provides latest released entry list, including both newly registered entries and updated entries. Each entry ID is linked to the xPSSS page. All the entry ID list in PDB is also available.

The URL is http://www.pdbj.org/pdbj_update.html .

Sequence Navigator

Sequence Navigator is a tool to look for molecules with similar sequences.

URL: http://www.pdbj.org/seqnavix/

Structure Navigator

Structure Navigator is a tool to look for molecules with similar structures.

URL: http://www.pdbj.org/stnavix/

SeSAW

SeSAW (Sequence-Derived Structural Alignment Weights) provides functional annotations that identifies conserved sequence and structural motifs in query proteins. See also SeSAW Tutorial.

The URL is http://www.pdbj.org/sesaw/ .

GIRAF

This service is currently under (active) development.

GIRAF is a similarity search service for ligand binding sites available at this site. For a given PDB ID or uploaded PDB file, GIRAF searches for known ligand binding sites in the PDB that are similar to substructures of the query.

URL：http://www.pdbj.org/giraf/

EM Navigator

EM Navigator is a data browser for biological 3D electron microscopy.

URL: http://www.pdbj.org/emnavi/?lang=en

NMR data search (BMRB)

This service provides to search in the biomolecule NMR database BMRB.

URL: http://bmrb.protein.osaka-u.ac.jp/search/

Status Search

Status Search provides searching service of PDB entries which are already deposited but yet released.

URL: http://service.pdbj.org/status/