The performance of PDBj Mine is compared with that of xPSSS. The response times of queries are measured in milliseconds (ms).
|
|
| PDBj Mine (ms)
| xPSSS (ms)
| query
|
| 1
| 1
| 181
| 175
| PDBID 8pap
|
| 2
| 2
| 245
| 3033
| PDBID 2*
|
| 3
| 3
| 434
| 285
| PDBID 1*p
|
| 4
| 4
| 433
| 344
| PDBID *im
|
| 5
| 5
| 63
| 1462
| PDBID 1* -> add keyword "globin"
|
| 6
| 6
| 79
| 1102
| PDBID 2* -> add keyword "human POLYMERASE"
|
| 7
| 7
| 96
| 578
| PDBID 3* -> add keyword "SPERM protein MYOGLOBIN"
|
|
|
| PDBj Mine (ms)
| xPSSS (ms)
| query
|
| 8
| 1
| 110
| 269
| tRNA
|
| 9
| 2
| 105
| 262
| head tail
|
| 10
| 3
| 76
| 163
| camel and light
|
| 11
| 4
| 72
| 238
| globin human
|
| 12
| 5
| 97
| 407
| clostridium thermocellum cellulase
|
|
|
| PDBj Mine (ms)
| xPSSS (ms)
| query
|
| 13
| 1
| 549
| 219
| PDBID 1a*
|
| 14
| 2
| 210
| 806
| release date (after 2000/01/01)
|
| 15
| 3
| 214
| 233
| release date (after 2000/01/)
|
| 16
| 4
| 199
| 169
| release date (after 2000)
|
| 17
| 5
| 169
| 131
| release date (before 2000/12/31)
|
| 18
| 6
| 127
| 127
| release date (before 2000/12/)
|
| 19
| 7
| 119
| 129
| release date (before 2000/)
|
| 20
| 8
| 202
| 160
| deposition date (after 2000/01/01)
|
| 21
| 9
| 197
| 145
| deposition date (after 2000/01)
|
| 22
| 10
| 206
| 203
| deposition date (after 2000/)
|
| 23
| 11
| 275
| 266
| deposition date (before 2000/12/31)
|
| 24
| 12
| 254
| 133
| deposition date (before 2000/12)
|
| 25
| 13
| 246
| 129
| deposition date (before 2000/)
|
| 26
| 14
| 250
| 1358
| PDBID 1* rel(after 2003/01/01)dep(after 2000/01/01)
|
| 27
| 15
| 220
| 1374
| PDBID 1* rel(after 2003/01/01)dep(before 2000/01/01)
|
| 28
| 16
| 130
| 1342
| PDBID 1* rel(before 2003/01/01)dep(after 2000/01/01)
|
| 29
| 17
| 139
| 1332
| PDBID 1* rel(before 2003/01/01)dep(before 2000/01/01)
|
| 30
| 18
| 60
| 368
| citation author Ito, N.
|
| 31
| 19
| 70
| 104
| citation author Ito, N. Phillips, S.E.V.
|
| 32
| 20
| 52
| 108
| citation author Ito, N. Phillips, S.E.V., Knowles, P.F.
|
| 33
| 21
| 98
| 560
| citation author Phillips Jr., G.N. (primary)
|
| 34
| 22
| 76
| 276
| citation author Phillips Jr., G.N. Bae, E. (primary)
|
| 35
| 23
| 59
| 121
| citation author Phillips Jr., G.N. Bae, E. Bingman, C.A. (primary)
|
| 36
| 24
| 143
| 267
| journal title (alcohol dehydrogenase)
|
| 37
| 25
| 108
| 125
| journal name (molecular cell)
|
| 38
| 26
| 323
| 3697
| journal year (2001)
|
| 39
| 27
| 61
| 202
| journal volume (555)
|
| 40
| 28
| 159
| 466
| journal year (1991) volume (266) exp (X-RAY DIIFFRACTION)
|
| 41
| 29
| 444
| 406
| chain type (polypeptide(L) YES)
|
| 42
| 30
| 45
| 177
| chain type (polypeptide(D) YES)
|
| 43
| 31
| 84
| 132
| chain type (polydeoxyribonucleotide YES)
|
| 44
| 32
| 81
| 124
| chain type (polyribonucleotide YES)
|
| 45
| 33
| 47
| 174
| chain type (polysaccharide(D) YES)
|
| 46
| 34
| 285
| 159
| chain type (polypeptide(L) NO)
|
| 47
| 35
| 296
| 146
| chain type (polypeptide(D) NO)
|
| 48
| 36
| 283
| 146
| chain type (polydeoxyribonucleotide NO)
|
| 49
| 37
| 291
| 129
| chain type (polyribonucleotide NO)
|
| 50
| 38
| 274
| 123
| chain type (polysaccharide(D) NO)
|
| 51
| 39
| 452
| 147
| chain type (polypeptide(L) YES) chain type (polypeptide(D) NO) chain type (polydeoxyribonucleotide NO) chain type (polyribonucleotide NO) chain type (polysaccharide(D) NO)
|
| 52
| 40
| 43
| 75
| chain type (polypeptide(L) NO) chain type (polypeptide(D) YES) chain type (polydeoxyribonucleotide NO) chain type (polyribonucleotide NO) chain type (polysaccharide(D) NO)
|
| 53
| 41
| 101
| 140
| chain type (polypeptide(L) NO) chain type (polypeptide(D) NO) chain type (polydeoxyribonucleotide YES) chain type (polyribonucleotide NO) chain type (polysaccharide(D) NO)
|
| 54
| 42
| 78
| 123
| chain type (polypeptide(L) NO) chain type (polypeptide(D) NO) chain type (polydeoxyribonucleotide NO) chain type (polyribonucleotide YES) chain type (polysaccharide(D) NO)
|
| 55
| 43
| 48
| 96
| chain type (polypeptide(L) NO) chain type (polypeptide(D) NO) chain type (polydeoxyribonucleotide NO) chain type (polyribonucleotide NO) chain type (polysaccharide(D) YES)
|
| 56
| 44
| 54
| 257
| descriptor (hydrogenase)
|
| 57
| 45
| 94
| 80
| struct title (allosteric conformation)
|
| 58
| 46
| 68
| 87
| PubMed (1847215)
|
| 59
| 47
| 81
| 217
| GO (0007596)
|
| 60
| 48
| 74
| 195
| PIR (S49220)
|
| 61
| 49
| 92
| 165
| EC (3.2.1.17)
|
| 62
| 50
| 77
| 459
| Uniprot (P09211)
|
| 63
| 51
| 68
| 94
| GB (10121892)
|
| 64
| 52
| 48
| 94
| EMBL (Y08011)
|
| 65
| 53
| 279
| 999
| PubMed
|
| 66
| 54
| 318
| 605
| GO
|
| 67
| 55
| 261
| 391
| EC
|
| 68
| 56
| 266
| 138
| Uniprot
|
| 69
| 57
| 252
| 137
| GB
|
| 70
| 58
| 387
| 218
| EMBL
|
| 71
| 59
| 402
| 154
| PIR
|
| 72
| 60
| 74
| 714
| ligand (ATP)
|
| 73
| 61
| 92
| 181
| chain number (min 10 )
|
| 74
| 62
| 264
| 448
| chain number (max 30)
|
| 75
| 63
| 63
| 141
| chain number (min 10 - max 30)
|
| 76
| 64
| 281
| 684
| chain length (min 6 )
|
| 77
| 65
| 271
| 119
| chain length (max 24 )
|
| 78
| 66
| 421
| 142
| chain length (min 6 - max 24 )
|
| 79
| 67
| 60
| 373
| chain number(min30-max40) chain length(min20-max30)
|
| 80
| 68
| 346
| 137
| Experimental method (X-RAY DIFFRACTION)
|
| 81
| 69
| 48
| 271
| Experimental method (NEUTRON DIFFRACTION)
|
| 82
| 70
| 47
| 189
| Experimental method (FIBER DIFFRACTION)
|
| 83
| 71
| 47
| 117
| Experimental method (ELECTRON CRYSTALLOGRAPY)
|
| 84
| 72
| 51
| 147
| Experimental method (ELECTRON MICROSCOPY)
|
| 85
| 73
| 103
| 264
| Experimental method (SOLUTION NMR)
|
| 86
| 74
| 47
| 240
| Experimental method (SOLID-STATE NMR)
|
| 87
| 75
| 47
| 301
| Experimental method (SOLUTION SCATTERING)
|
| 88
| 76
| 47
| 243
| Experimental method (POWDER DIFFRACTION)
|
| 89
| 77
| 43
| 117
| Experimental method (INFRARED SPECTORSCOPY)
|
| 90
| 78
| 256
| 319
| resolution (min 2.3 )
|
| 91
| 79
| 278
| 403
| resolution (max 5.0 )
|
| 92
| 80
| 164
| 148
| resolution (min 2.3 - max 3.0 )
|
| 93
| 81
| 148
| 253
| source (Bos taurus )
|
| 94
| 82
| 92
| 222
| host species (Homo sapiens )
|
|
| PDBj Mine (ms)
| xPSSS (ms)
| explanation
|
| 1
| 752
| 837
| Search for all entries with resolution less than or equal to 2.0 angstroms
|
| 2
| 95
| 1327
| Search for entity names with EC number 1.1.1.1
|
| 3
| 2083
| 658
| List PDB ID and total polymer molecular weights greater than 10000
|
| 4
| 6185
| 1064
| Search for all entries and helix of length with helix of length equal to 10 residues
|
| 5
| 4340
| 950
| Search for all PDB with the number of beta-strands greater than 9
|
| 6
| 4846
| 4561
| Search for all entries and citation titles with the primary citation author equal to "Ito, N."
|
| 7
| 879
| 1284
| Search for all entries with chain type containing polyribonucleotide.
|
| 8
| 253
| 9639
| Search for all entries with chain types containing polypeptide(L) and polydeoxyribonucleotide.
|
| 9
| 6793
| 3482
| Search for polypeptide(L) homodimers
|
| 10
| 3943
| 32158
| Search for entries with more than 2 DNA strands and with ATP.
|
