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| Derived databaseThe Japanese version help is here. eF-siteeF-site (electrostatic-surface of Functional site) is a database for molecular surfaces of proteins' functional sites, displaying the electrostatic potentials and hydrophobic properties together on the Connolly surfaces of the active sites, for analyses of the molecular recognition mechanisms. URL: http://ef-site.hgc.jp/eF-site/ eF-surfeF-surf is a web server to calculate the molecular surface of the up-loaded file with PDB format in the same way as the eF-site database. URL: http://ef-site.hgc.jp/eF-surf/ eF-seekeF-seek is a web server to search for the similar ligand binding sites for the uploaded coordinate file with PDB format. The representative binding sites in eF-site database are search by our own algorithm based on the clique search algorithm. URL: http://ef-site.hgc.jp/eF-seek/ eProtSeProtS (Encyclopedia of Protein Structures) is a dictionary with pictures of the protein three-dimensional structures, for understanding the tertiary structures and the biological functions for several selected protein molecules that are particularly important for biology. This Web site can be prepared for the general audience. As it is a wiki-based repository of documents, any people can deposit or edit documents as well as browse. URL: http://www.pdbj.org/eprots/index_en.cgi ProModeProMode is a database of normal mode analysis of proteins. URL: http://cube.socs.waseda.ac.jp/pages/jsp/index.jsp Molecule of the MonthIntroduction to biological macromolecules written by Dr. David S. Goodsell of RCSB. A new article will be uploaded every month. The original site at RCSB is here. The Japanese translation at PDBj is in the site below. |